Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC14.42□□□□□ -0.1
SKA3Q8IX90 AC073439.1-201ENST00000624121 1774 ntBASIC14.42□□□□□ -0.1
SKA3Q8IX90 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SKA3Q8IX90 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
SKA3Q8IX90 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SKA3Q8IX90 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
SKA3Q8IX90 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC14.42□□□□□ -0.1
SKA3Q8IX90 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC14.41□□□□□ -0.1
SKA3Q8IX90 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
SKA3Q8IX90 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
SKA3Q8IX90 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
SKA3Q8IX90 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC14.41□□□□□ -0.1
SKA3Q8IX90 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC14.41□□□□□ -0.1
SKA3Q8IX90 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SKA3Q8IX90 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
SKA3Q8IX90 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SKA3Q8IX90 LINC02228-204ENST00000642115 2962 ntBASIC14.41□□□□□ -0.1
SKA3Q8IX90 GDF11-201ENST00000257868 8657 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
SKA3Q8IX90 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC14.41□□□□□ -0.1
SKA3Q8IX90 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SKA3Q8IX90 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC14.41□□□□□ -0.1
SKA3Q8IX90 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC14.41□□□□□ -0.1
SKA3Q8IX90 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SKA3Q8IX90 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SKA3Q8IX90 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SKA3Q8IX90 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SKA3Q8IX90 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SKA3Q8IX90 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SKA3Q8IX90 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC14.41□□□□□ -0.1
SKA3Q8IX90 SPDYE11-202ENST00000450699 704 ntBASIC14.41□□□□□ -0.1
SKA3Q8IX90 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC14.41□□□□□ -0.1
SKA3Q8IX90 KRT8P48-201ENST00000515599 1220 ntBASIC14.41□□□□□ -0.1
SKA3Q8IX90 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC14.41□□□□□ -0.1
SKA3Q8IX90 QPRT-203ENST00000562473 579 ntTSL 3 BASIC14.41□□□□□ -0.1
SKA3Q8IX90 SPDYE9P-201ENST00000570642 692 ntBASIC14.41□□□□□ -0.1
SKA3Q8IX90 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC14.41□□□□□ -0.1
SKA3Q8IX90 MIR4469-201ENST00000583919 79 ntBASIC14.41□□□□□ -0.1
SKA3Q8IX90 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC14.41□□□□□ -0.1
SKA3Q8IX90 SPDYE10P-202ENST00000612005 668 ntBASIC14.41□□□□□ -0.1
SKA3Q8IX90 SPDYE8P-202ENST00000612377 668 ntBASIC14.41□□□□□ -0.1
SKA3Q8IX90 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC14.41□□□□□ -0.1
SKA3Q8IX90 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC14.41□□□□□ -0.1
SKA3Q8IX90 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC14.41□□□□□ -0.1
SKA3Q8IX90 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC14.41□□□□□ -0.1
SKA3Q8IX90 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
SKA3Q8IX90 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
SKA3Q8IX90 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
SKA3Q8IX90 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC14.41□□□□□ -0.1
SKA3Q8IX90 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SKA3Q8IX90 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
SKA3Q8IX90 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
SKA3Q8IX90 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC14.41□□□□□ -0.1
SKA3Q8IX90 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
SKA3Q8IX90 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
SKA3Q8IX90 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
SKA3Q8IX90 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
SKA3Q8IX90 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SKA3Q8IX90 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
SKA3Q8IX90 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC14.41□□□□□ -0.1
SKA3Q8IX90 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SKA3Q8IX90 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC14.41□□□□□ -0.1
SKA3Q8IX90 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
SKA3Q8IX90 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SKA3Q8IX90 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SKA3Q8IX90 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
SKA3Q8IX90 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
SKA3Q8IX90 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC14.4□□□□□ -0.1
SKA3Q8IX90 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
SKA3Q8IX90 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SKA3Q8IX90 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC14.4□□□□□ -0.1
SKA3Q8IX90 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SKA3Q8IX90 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC14.4□□□□□ -0.1
SKA3Q8IX90 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
SKA3Q8IX90 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC14.4□□□□□ -0.1
SKA3Q8IX90 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
SKA3Q8IX90 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
SKA3Q8IX90 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SKA3Q8IX90 COA5-202ENST00000409997 557 ntTSL 4 BASIC14.4□□□□□ -0.1
SKA3Q8IX90 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC14.4□□□□□ -0.1
SKA3Q8IX90 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
SKA3Q8IX90 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC14.4□□□□□ -0.1
SKA3Q8IX90 AC093724.1-201ENST00000448659 1027 ntBASIC14.4□□□□□ -0.1
SKA3Q8IX90 TIMM8BP1-201ENST00000452384 211 ntBASIC14.4□□□□□ -0.1
SKA3Q8IX90 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
SKA3Q8IX90 YBX1P5-201ENST00000509441 847 ntBASIC14.4□□□□□ -0.1
SKA3Q8IX90 PRYP6-201ENST00000514804 343 ntBASIC14.4□□□□□ -0.1
SKA3Q8IX90 AC243562.1-201ENST00000560672 389 ntBASIC14.4□□□□□ -0.1
SKA3Q8IX90 INO80E-210ENST00000567705 880 ntTSL 3 BASIC14.4□□□□□ -0.1
SKA3Q8IX90 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC14.4□□□□□ -0.1
SKA3Q8IX90 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC14.4□□□□□ -0.1
SKA3Q8IX90 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC14.4□□□□□ -0.1
SKA3Q8IX90 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC14.4□□□□□ -0.1
SKA3Q8IX90 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC14.4□□□□□ -0.1
SKA3Q8IX90 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SKA3Q8IX90 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
SKA3Q8IX90 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC14.4□□□□□ -0.1
SKA3Q8IX90 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC14.4□□□□□ -0.1
SKA3Q8IX90 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC14.4□□□□□ -0.1
SKA3Q8IX90 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SKA3Q8IX90 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC14.4□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms