Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
ABCA4P78363 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
ABCA4P78363 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
ABCA4P78363 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC13.93□□□□□ -0.18
ABCA4P78363 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC13.93□□□□□ -0.18
ABCA4P78363 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
ABCA4P78363 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
ABCA4P78363 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
ABCA4P78363 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
ABCA4P78363 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
ABCA4P78363 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
ABCA4P78363 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
ABCA4P78363 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC13.93□□□□□ -0.18
ABCA4P78363 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC13.93□□□□□ -0.18
ABCA4P78363 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC13.93□□□□□ -0.18
ABCA4P78363 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
ABCA4P78363 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC13.93□□□□□ -0.18
ABCA4P78363 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC13.93□□□□□ -0.18
ABCA4P78363 CTBP2P3-201ENST00000585629 1255 ntBASIC13.93□□□□□ -0.18
ABCA4P78363 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
ABCA4P78363 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
ABCA4P78363 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
ABCA4P78363 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC13.93□□□□□ -0.18
ABCA4P78363 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
ABCA4P78363 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
ABCA4P78363 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
ABCA4P78363 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
ABCA4P78363 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
ABCA4P78363 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC13.93□□□□□ -0.18
ABCA4P78363 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
ABCA4P78363 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
ABCA4P78363 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
ABCA4P78363 HR-201ENST00000312841 5351 ntTSL 5 BASIC13.93□□□□□ -0.18
ABCA4P78363 SPDYE17-201ENST00000412399 783 ntBASIC13.93□□□□□ -0.18
ABCA4P78363 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC13.93□□□□□ -0.18
ABCA4P78363 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC13.93□□□□□ -0.18
ABCA4P78363 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC13.93□□□□□ -0.18
ABCA4P78363 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC13.93□□□□□ -0.18
ABCA4P78363 MIR8072-201ENST00000614241 80 ntBASIC13.93□□□□□ -0.18
ABCA4P78363 AL033527.5-201ENST00000641382 801 ntBASIC13.93□□□□□ -0.18
ABCA4P78363 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC13.93□□□□□ -0.18
ABCA4P78363 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
ABCA4P78363 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
ABCA4P78363 IMPDH1P4-201ENST00000445028 1534 ntBASIC13.93□□□□□ -0.18
ABCA4P78363 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC13.93□□□□□ -0.18
ABCA4P78363 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
ABCA4P78363 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
ABCA4P78363 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC13.93□□□□□ -0.18
ABCA4P78363 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC13.93□□□□□ -0.18
ABCA4P78363 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
ABCA4P78363 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
ABCA4P78363 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
ABCA4P78363 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
ABCA4P78363 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
ABCA4P78363 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
ABCA4P78363 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
ABCA4P78363 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC13.92□□□□□ -0.18
ABCA4P78363 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC13.92□□□□□ -0.18
ABCA4P78363 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
ABCA4P78363 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
ABCA4P78363 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC13.92□□□□□ -0.18
ABCA4P78363 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
ABCA4P78363 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
ABCA4P78363 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
ABCA4P78363 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
ABCA4P78363 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
ABCA4P78363 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC13.92□□□□□ -0.18
ABCA4P78363 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC13.92□□□□□ -0.18
ABCA4P78363 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
ABCA4P78363 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
ABCA4P78363 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC13.92□□□□□ -0.18
ABCA4P78363 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC13.92□□□□□ -0.18
ABCA4P78363 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC13.92□□□□□ -0.18
ABCA4P78363 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC13.92□□□□□ -0.18
ABCA4P78363 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC13.92□□□□□ -0.18
ABCA4P78363 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
ABCA4P78363 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC13.92□□□□□ -0.18
ABCA4P78363 PAM16-204ENST00000571941 674 ntTSL 3 BASIC13.92□□□□□ -0.18
ABCA4P78363 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC13.92□□□□□ -0.18
ABCA4P78363 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
ABCA4P78363 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
ABCA4P78363 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
ABCA4P78363 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC13.92□□□□□ -0.18
ABCA4P78363 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC13.92□□□□□ -0.18
ABCA4P78363 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC13.92□□□□□ -0.18
ABCA4P78363 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
ABCA4P78363 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
ABCA4P78363 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
ABCA4P78363 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
ABCA4P78363 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC13.92□□□□□ -0.18
ABCA4P78363 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
ABCA4P78363 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC13.92□□□□□ -0.18
ABCA4P78363 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC13.92□□□□□ -0.18
ABCA4P78363 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC13.92□□□□□ -0.18
ABCA4P78363 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
ABCA4P78363 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC13.92□□□□□ -0.18
ABCA4P78363 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
ABCA4P78363 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC13.92□□□□□ -0.18
ABCA4P78363 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC13.92□□□□□ -0.18
ABCA4P78363 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC13.92□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms