Protein–RNA interactions for Protein: P31645

SLC6A4, Sodium-dependent serotonin transporter, humanhuman

Predictions only

Length 630 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC6A4P31645 AC002472.2-201ENST00000442739 958 ntBASIC16.59■□□□□ 0.25
SLC6A4P31645 TMPRSS11CP-201ENST00000453277 683 ntBASIC16.59■□□□□ 0.25
SLC6A4P31645 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
SLC6A4P31645 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC16.59■□□□□ 0.25
SLC6A4P31645 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC16.59■□□□□ 0.25
SLC6A4P31645 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
SLC6A4P31645 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC16.59■□□□□ 0.25
SLC6A4P31645 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
SLC6A4P31645 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
SLC6A4P31645 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
SLC6A4P31645 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SLC6A4P31645 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC16.59■□□□□ 0.25
SLC6A4P31645 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
SLC6A4P31645 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SLC6A4P31645 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC16.59■□□□□ 0.25
SLC6A4P31645 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC16.59■□□□□ 0.25
SLC6A4P31645 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC16.59■□□□□ 0.25
SLC6A4P31645 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SLC6A4P31645 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC16.59■□□□□ 0.25
SLC6A4P31645 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
SLC6A4P31645 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.25
SLC6A4P31645 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
SLC6A4P31645 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC16.58■□□□□ 0.25
SLC6A4P31645 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
SLC6A4P31645 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
SLC6A4P31645 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
SLC6A4P31645 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
SLC6A4P31645 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SLC6A4P31645 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SLC6A4P31645 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SLC6A4P31645 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
SLC6A4P31645 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
SLC6A4P31645 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC16.58■□□□□ 0.24
SLC6A4P31645 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
SLC6A4P31645 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC16.58■□□□□ 0.24
SLC6A4P31645 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC16.58■□□□□ 0.24
SLC6A4P31645 HIST3H2BA-201ENST00000436555 524 ntBASIC16.58■□□□□ 0.24
SLC6A4P31645 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC16.58■□□□□ 0.24
SLC6A4P31645 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC16.58■□□□□ 0.24
SLC6A4P31645 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC16.58■□□□□ 0.24
SLC6A4P31645 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC16.58■□□□□ 0.24
SLC6A4P31645 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC16.58■□□□□ 0.24
SLC6A4P31645 HFE2-206ENST00000634927 506 ntTSL 4 BASIC16.58■□□□□ 0.24
SLC6A4P31645 AC004840.1-201ENST00000636359 365 ntBASIC16.58■□□□□ 0.24
SLC6A4P31645 AL033527.5-202ENST00000641632 1098 ntBASIC16.58■□□□□ 0.24
SLC6A4P31645 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
SLC6A4P31645 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC16.58■□□□□ 0.24
SLC6A4P31645 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
SLC6A4P31645 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SLC6A4P31645 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SLC6A4P31645 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
SLC6A4P31645 AL596087.1-201ENST00000400979 1969 ntBASIC16.58■□□□□ 0.24
SLC6A4P31645 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SLC6A4P31645 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
SLC6A4P31645 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC16.58■□□□□ 0.24
SLC6A4P31645 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
SLC6A4P31645 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
SLC6A4P31645 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
SLC6A4P31645 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
SLC6A4P31645 GCK-209ENST00000616242 2260 ntTSL 5 BASIC16.58■□□□□ 0.24
SLC6A4P31645 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC16.58■□□□□ 0.24
SLC6A4P31645 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SLC6A4P31645 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC16.58■□□□□ 0.24
SLC6A4P31645 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SLC6A4P31645 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SLC6A4P31645 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
SLC6A4P31645 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
SLC6A4P31645 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
SLC6A4P31645 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SLC6A4P31645 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC16.57■□□□□ 0.24
SLC6A4P31645 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC16.57■□□□□ 0.24
SLC6A4P31645 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC16.57■□□□□ 0.24
SLC6A4P31645 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
SLC6A4P31645 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SLC6A4P31645 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
SLC6A4P31645 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC16.57■□□□□ 0.24
SLC6A4P31645 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SLC6A4P31645 SP100-205ENST00000409824 1802 ntTSL 5 BASIC16.57■□□□□ 0.24
SLC6A4P31645 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
SLC6A4P31645 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SLC6A4P31645 BNIP3P1-202ENST00000550043 1585 ntBASIC16.57■□□□□ 0.24
SLC6A4P31645 TDG-209ENST00000544861 1387 ntTSL 2 BASIC16.57■□□□□ 0.24
SLC6A4P31645 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SLC6A4P31645 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC16.57■□□□□ 0.24
SLC6A4P31645 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC16.57■□□□□ 0.24
SLC6A4P31645 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC16.57■□□□□ 0.24
SLC6A4P31645 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
SLC6A4P31645 RN7SL618P-201ENST00000477850 296 ntBASIC16.57■□□□□ 0.24
SLC6A4P31645 GREM1-201ENST00000560677 623 ntTSL 4 BASIC16.57■□□□□ 0.24
SLC6A4P31645 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC16.57■□□□□ 0.24
SLC6A4P31645 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SLC6A4P31645 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC16.57■□□□□ 0.24
SLC6A4P31645 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
SLC6A4P31645 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
SLC6A4P31645 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC16.57■□□□□ 0.24
SLC6A4P31645 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC16.57■□□□□ 0.24
SLC6A4P31645 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SLC6A4P31645 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SLC6A4P31645 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC16.57■□□□□ 0.24
SLC6A4P31645 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms