Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
HLA-DMBP28068 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
HLA-DMBP28068 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
HLA-DMBP28068 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC12.43□□□□□ -0.42
HLA-DMBP28068 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC12.43□□□□□ -0.42
HLA-DMBP28068 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
HLA-DMBP28068 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
HLA-DMBP28068 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
HLA-DMBP28068 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
HLA-DMBP28068 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
HLA-DMBP28068 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC12.43□□□□□ -0.42
HLA-DMBP28068 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
HLA-DMBP28068 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
HLA-DMBP28068 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
HLA-DMBP28068 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC12.43□□□□□ -0.42
HLA-DMBP28068 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
HLA-DMBP28068 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC12.43□□□□□ -0.42
HLA-DMBP28068 POLD2P1-201ENST00000511220 997 ntBASIC12.43□□□□□ -0.42
HLA-DMBP28068 IGHV3-22-201ENST00000520721 359 ntBASIC12.43□□□□□ -0.42
HLA-DMBP28068 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
HLA-DMBP28068 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
HLA-DMBP28068 MIR4751-201ENST00000578027 74 ntBASIC12.43□□□□□ -0.42
HLA-DMBP28068 PIN1-206ENST00000587625 878 ntTSL 2 BASIC12.43□□□□□ -0.42
HLA-DMBP28068 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC12.43□□□□□ -0.42
HLA-DMBP28068 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC12.43□□□□□ -0.42
HLA-DMBP28068 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC12.43□□□□□ -0.42
HLA-DMBP28068 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC12.43□□□□□ -0.42
HLA-DMBP28068 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC12.43□□□□□ -0.42
HLA-DMBP28068 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
HLA-DMBP28068 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC12.43□□□□□ -0.42
HLA-DMBP28068 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC12.43□□□□□ -0.42
HLA-DMBP28068 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
HLA-DMBP28068 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC12.43□□□□□ -0.42
HLA-DMBP28068 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
HLA-DMBP28068 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC12.43□□□□□ -0.42
HLA-DMBP28068 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
HLA-DMBP28068 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC12.43□□□□□ -0.42
HLA-DMBP28068 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
HLA-DMBP28068 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC12.43□□□□□ -0.42
HLA-DMBP28068 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC12.43□□□□□ -0.42
HLA-DMBP28068 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
HLA-DMBP28068 AP005117.1-202ENST00000581724 1908 ntBASIC12.43□□□□□ -0.42
HLA-DMBP28068 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
HLA-DMBP28068 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
HLA-DMBP28068 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
HLA-DMBP28068 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
HLA-DMBP28068 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
HLA-DMBP28068 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
HLA-DMBP28068 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
HLA-DMBP28068 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
HLA-DMBP28068 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
HLA-DMBP28068 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC12.42□□□□□ -0.42
HLA-DMBP28068 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
HLA-DMBP28068 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
HLA-DMBP28068 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
HLA-DMBP28068 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
HLA-DMBP28068 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC12.42□□□□□ -0.42
HLA-DMBP28068 WARS-232ENST00000556645 2508 ntTSL 5 BASIC12.42□□□□□ -0.42
HLA-DMBP28068 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
HLA-DMBP28068 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
HLA-DMBP28068 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
HLA-DMBP28068 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC12.42□□□□□ -0.42
HLA-DMBP28068 FES-204ENST00000414248 2327 ntTSL 2 BASIC12.42□□□□□ -0.42
HLA-DMBP28068 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
HLA-DMBP28068 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC12.42□□□□□ -0.42
HLA-DMBP28068 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
HLA-DMBP28068 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
HLA-DMBP28068 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
HLA-DMBP28068 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC12.42□□□□□ -0.42
HLA-DMBP28068 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
HLA-DMBP28068 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC12.42□□□□□ -0.42
HLA-DMBP28068 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
HLA-DMBP28068 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC12.42□□□□□ -0.42
HLA-DMBP28068 HMGA1P7-201ENST00000406908 502 ntBASIC12.42□□□□□ -0.42
HLA-DMBP28068 RNA5SP415-201ENST00000517246 115 ntBASIC12.42□□□□□ -0.42
HLA-DMBP28068 CD63-204ENST00000546939 779 ntTSL 3 BASIC12.42□□□□□ -0.42
HLA-DMBP28068 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
HLA-DMBP28068 AL671883.3-201ENST00000603274 991 ntBASIC12.42□□□□□ -0.42
HLA-DMBP28068 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
HLA-DMBP28068 AC023511.2-201ENST00000618803 211 ntBASIC12.42□□□□□ -0.42
HLA-DMBP28068 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
HLA-DMBP28068 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC12.42□□□□□ -0.42
HLA-DMBP28068 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
HLA-DMBP28068 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
HLA-DMBP28068 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
HLA-DMBP28068 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
HLA-DMBP28068 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC12.42□□□□□ -0.42
HLA-DMBP28068 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
HLA-DMBP28068 ACE-203ENST00000413513 2237 ntTSL 2 BASIC12.42□□□□□ -0.42
HLA-DMBP28068 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
HLA-DMBP28068 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
HLA-DMBP28068 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
HLA-DMBP28068 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
HLA-DMBP28068 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
HLA-DMBP28068 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC12.42□□□□□ -0.42
HLA-DMBP28068 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
HLA-DMBP28068 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
HLA-DMBP28068 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
HLA-DMBP28068 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC12.42□□□□□ -0.42
HLA-DMBP28068 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 49.1 ms