Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
COL9A1P20849 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC16.54■□□□□ 0.24
COL9A1P20849 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
COL9A1P20849 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
COL9A1P20849 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
COL9A1P20849 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
COL9A1P20849 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC16.54■□□□□ 0.24
COL9A1P20849 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
COL9A1P20849 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
COL9A1P20849 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
COL9A1P20849 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC16.54■□□□□ 0.24
COL9A1P20849 IDS-203ENST00000428056 1213 ntTSL 2 BASIC16.54■□□□□ 0.24
COL9A1P20849 TCERG1L-AS1-201ENST00000436942 472 ntTSL 2 BASIC16.54■□□□□ 0.24
COL9A1P20849 AL355864.2-201ENST00000447420 863 ntBASIC16.54■□□□□ 0.24
COL9A1P20849 RHOA-206ENST00000454011 889 ntTSL 2 BASIC16.54■□□□□ 0.24
COL9A1P20849 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC16.54■□□□□ 0.24
COL9A1P20849 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
COL9A1P20849 FTH1P14-201ENST00000482930 551 ntBASIC16.54■□□□□ 0.24
COL9A1P20849 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC16.54■□□□□ 0.24
COL9A1P20849 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC16.54■□□□□ 0.24
COL9A1P20849 UBXN1-214ENST00000533000 367 ntTSL 5 BASIC16.54■□□□□ 0.24
COL9A1P20849 SAP25-201ENST00000538735 837 ntAPPRIS P2 TSL 3 BASIC16.54■□□□□ 0.24
COL9A1P20849 AC016044.1-201ENST00000560818 572 ntTSL 4 BASIC16.54■□□□□ 0.24
COL9A1P20849 AC009119.2-201ENST00000561562 723 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
COL9A1P20849 AP006547.1-201ENST00000563435 692 ntBASIC16.54■□□□□ 0.24
COL9A1P20849 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
COL9A1P20849 ZNF586-204ENST00000598183 603 ntTSL 5 BASIC16.54■□□□□ 0.24
COL9A1P20849 RHOXF1P1-202ENST00000635473 501 ntBASIC16.54■□□□□ 0.24
COL9A1P20849 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
COL9A1P20849 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC16.54■□□□□ 0.24
COL9A1P20849 TP73-213ENST00000604479 1623 ntTSL 5 BASIC16.54■□□□□ 0.24
COL9A1P20849 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
COL9A1P20849 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
COL9A1P20849 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC16.54■□□□□ 0.24
COL9A1P20849 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
COL9A1P20849 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
COL9A1P20849 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
COL9A1P20849 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
COL9A1P20849 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC16.53■□□□□ 0.24
COL9A1P20849 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
COL9A1P20849 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
COL9A1P20849 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
COL9A1P20849 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC16.53■□□□□ 0.24
COL9A1P20849 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
COL9A1P20849 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC16.53■□□□□ 0.24
COL9A1P20849 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
COL9A1P20849 IGHV3-49-201ENST00000390625 439 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
COL9A1P20849 RBM39-205ENST00000397370 612 ntTSL 2 BASIC16.53■□□□□ 0.24
COL9A1P20849 VMO1-203ENST00000416307 712 ntTSL 2 BASIC16.53■□□□□ 0.24
COL9A1P20849 AL603841.1-201ENST00000430516 664 ntBASIC16.53■□□□□ 0.24
COL9A1P20849 AC093724.1-201ENST00000448659 1027 ntBASIC16.53■□□□□ 0.24
COL9A1P20849 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC16.53■□□□□ 0.24
COL9A1P20849 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC16.53■□□□□ 0.24
COL9A1P20849 AL356417.2-202ENST00000608986 532 ntTSL 3 BASIC16.53■□□□□ 0.24
COL9A1P20849 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC16.53■□□□□ 0.24
COL9A1P20849 AC010503.4-201ENST00000615487 688 ntBASIC16.53■□□□□ 0.24
COL9A1P20849 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC16.53■□□□□ 0.24
COL9A1P20849 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
COL9A1P20849 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC16.53■□□□□ 0.24
COL9A1P20849 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
COL9A1P20849 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
COL9A1P20849 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC16.53■□□□□ 0.24
COL9A1P20849 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC16.53■□□□□ 0.24
COL9A1P20849 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
COL9A1P20849 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
COL9A1P20849 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
COL9A1P20849 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
COL9A1P20849 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
COL9A1P20849 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
COL9A1P20849 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC16.52■□□□□ 0.24
COL9A1P20849 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.24
COL9A1P20849 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.24
COL9A1P20849 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
COL9A1P20849 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
COL9A1P20849 AC060834.1-201ENST00000443027 2032 ntBASIC16.52■□□□□ 0.24
COL9A1P20849 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
COL9A1P20849 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
COL9A1P20849 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
COL9A1P20849 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
COL9A1P20849 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.24
COL9A1P20849 BORCS5-201ENST00000298571 549 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
COL9A1P20849 ATP5H-201ENST00000301587 603 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
COL9A1P20849 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
COL9A1P20849 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC16.52■□□□□ 0.24
COL9A1P20849 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
COL9A1P20849 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC16.52■□□□□ 0.24
COL9A1P20849 AC016694.1-201ENST00000434179 700 ntBASIC16.52■□□□□ 0.24
COL9A1P20849 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
COL9A1P20849 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
COL9A1P20849 AC125604.1-201ENST00000496255 707 ntBASIC16.52■□□□□ 0.24
COL9A1P20849 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
COL9A1P20849 AC246817.2-203ENST00000517357 569 ntTSL 4 BASIC16.52■□□□□ 0.24
COL9A1P20849 AC246817.2-202ENST00000519393 564 ntTSL 4 BASIC16.52■□□□□ 0.24
COL9A1P20849 CFL1-214ENST00000534769 758 ntTSL 2 BASIC16.52■□□□□ 0.24
COL9A1P20849 PTP4A1P2-201ENST00000546033 454 ntBASIC16.52■□□□□ 0.24
COL9A1P20849 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC16.52■□□□□ 0.24
COL9A1P20849 FGFR3P5-201ENST00000564496 886 ntBASIC16.52■□□□□ 0.24
COL9A1P20849 AC005695.3-201ENST00000614522 232 ntBASIC16.52■□□□□ 0.24
COL9A1P20849 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
COL9A1P20849 AC011491.1-203ENST00000637688 543 ntBASIC16.52■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms