Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC16.45■□□□□ 0.22
HOXC11O43248 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HOXC11O43248 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC16.45■□□□□ 0.22
HOXC11O43248 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HOXC11O43248 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
HOXC11O43248 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
HOXC11O43248 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HOXC11O43248 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
HOXC11O43248 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC16.45■□□□□ 0.22
HOXC11O43248 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HOXC11O43248 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC16.45■□□□□ 0.22
HOXC11O43248 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC16.45■□□□□ 0.22
HOXC11O43248 NAA50-208ENST00000497255 789 ntTSL 5 BASIC16.45■□□□□ 0.22
HOXC11O43248 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC16.45■□□□□ 0.22
HOXC11O43248 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
HOXC11O43248 WASH4P-201ENST00000564273 1246 ntBASIC16.45■□□□□ 0.22
HOXC11O43248 SPIB-207ENST00000597855 564 ntTSL 4 BASIC16.45■□□□□ 0.22
HOXC11O43248 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC16.45■□□□□ 0.22
HOXC11O43248 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
HOXC11O43248 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC16.45■□□□□ 0.22
HOXC11O43248 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
HOXC11O43248 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
HOXC11O43248 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC16.45■□□□□ 0.22
HOXC11O43248 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC16.45■□□□□ 0.22
HOXC11O43248 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC16.45■□□□□ 0.22
HOXC11O43248 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
HOXC11O43248 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC16.45■□□□□ 0.22
HOXC11O43248 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
HOXC11O43248 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
HOXC11O43248 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HOXC11O43248 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC16.45■□□□□ 0.22
HOXC11O43248 AD000864.1-201ENST00000624076 2295 ntBASIC16.45■□□□□ 0.22
HOXC11O43248 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
HOXC11O43248 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HOXC11O43248 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
HOXC11O43248 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
HOXC11O43248 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HOXC11O43248 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HOXC11O43248 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC16.45■□□□□ 0.22
HOXC11O43248 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC16.45■□□□□ 0.22
HOXC11O43248 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC16.45■□□□□ 0.22
HOXC11O43248 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC16.45■□□□□ 0.22
HOXC11O43248 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC16.45■□□□□ 0.22
HOXC11O43248 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HOXC11O43248 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HOXC11O43248 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
HOXC11O43248 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC16.44■□□□□ 0.22
HOXC11O43248 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HOXC11O43248 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC16.44■□□□□ 0.22
HOXC11O43248 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HOXC11O43248 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HOXC11O43248 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC16.44■□□□□ 0.22
HOXC11O43248 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC16.44■□□□□ 0.22
HOXC11O43248 AL118508.1-201ENST00000613502 2345 ntBASIC16.44■□□□□ 0.22
HOXC11O43248 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HOXC11O43248 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HOXC11O43248 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
HOXC11O43248 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
HOXC11O43248 RHOA-206ENST00000454011 889 ntTSL 2 BASIC16.44■□□□□ 0.22
HOXC11O43248 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HOXC11O43248 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC16.44■□□□□ 0.22
HOXC11O43248 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC16.44■□□□□ 0.22
HOXC11O43248 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC16.44■□□□□ 0.22
HOXC11O43248 RRP7BP-205ENST00000566851 833 ntBASIC16.44■□□□□ 0.22
HOXC11O43248 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC16.44■□□□□ 0.22
HOXC11O43248 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
HOXC11O43248 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC16.44■□□□□ 0.22
HOXC11O43248 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
HOXC11O43248 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC16.44■□□□□ 0.22
HOXC11O43248 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
HOXC11O43248 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
HOXC11O43248 Z97205.2-201ENST00000564697 1639 ntBASIC16.44■□□□□ 0.22
HOXC11O43248 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
HOXC11O43248 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
HOXC11O43248 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HOXC11O43248 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HOXC11O43248 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HOXC11O43248 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HOXC11O43248 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC16.43■□□□□ 0.22
HOXC11O43248 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
HOXC11O43248 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC16.43■□□□□ 0.22
HOXC11O43248 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HOXC11O43248 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
HOXC11O43248 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
HOXC11O43248 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HOXC11O43248 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HOXC11O43248 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC16.43■□□□□ 0.22
HOXC11O43248 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC16.43■□□□□ 0.22
HOXC11O43248 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
HOXC11O43248 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC16.43■□□□□ 0.22
HOXC11O43248 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC16.43■□□□□ 0.22
HOXC11O43248 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC16.43■□□□□ 0.22
HOXC11O43248 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC16.43■□□□□ 0.22
HOXC11O43248 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC16.43■□□□□ 0.22
HOXC11O43248 POLE2-203ENST00000553805 496 ntTSL 2 BASIC16.43■□□□□ 0.22
HOXC11O43248 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC16.43■□□□□ 0.22
HOXC11O43248 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC16.43■□□□□ 0.22
HOXC11O43248 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
HOXC11O43248 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HOXC11O43248 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC16.43■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms