Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
SDCBPO00560 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC13.88□□□□□ -0.19
SDCBPO00560 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC13.88□□□□□ -0.19
SDCBPO00560 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SDCBPO00560 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC13.88□□□□□ -0.19
SDCBPO00560 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SDCBPO00560 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
SDCBPO00560 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SDCBPO00560 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
SDCBPO00560 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
SDCBPO00560 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
SDCBPO00560 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC13.87□□□□□ -0.19
SDCBPO00560 AC131009.4-201ENST00000624048 1740 ntBASIC13.87□□□□□ -0.19
SDCBPO00560 AC022532.1-201ENST00000624563 1728 ntBASIC13.87□□□□□ -0.19
SDCBPO00560 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC13.87□□□□□ -0.19
SDCBPO00560 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
SDCBPO00560 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
SDCBPO00560 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC13.87□□□□□ -0.19
SDCBPO00560 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
SDCBPO00560 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
SDCBPO00560 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
SDCBPO00560 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
SDCBPO00560 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC13.87□□□□□ -0.19
SDCBPO00560 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
SDCBPO00560 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
SDCBPO00560 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC13.87□□□□□ -0.19
SDCBPO00560 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
SDCBPO00560 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
SDCBPO00560 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC13.87□□□□□ -0.19
SDCBPO00560 MED22-202ENST00000371999 987 ntTSL 3 BASIC13.87□□□□□ -0.19
SDCBPO00560 AC073621.1-201ENST00000392730 636 ntBASIC13.87□□□□□ -0.19
SDCBPO00560 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
SDCBPO00560 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
SDCBPO00560 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC13.87□□□□□ -0.19
SDCBPO00560 SLC25A6P2-201ENST00000497974 877 ntBASIC13.87□□□□□ -0.19
SDCBPO00560 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC13.87□□□□□ -0.19
SDCBPO00560 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC13.87□□□□□ -0.19
SDCBPO00560 ETFA-208ENST00000559602 792 ntTSL 3 BASIC13.87□□□□□ -0.19
SDCBPO00560 RN7SL510P-201ENST00000581311 263 ntBASIC13.87□□□□□ -0.19
SDCBPO00560 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC13.87□□□□□ -0.19
SDCBPO00560 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
SDCBPO00560 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC13.87□□□□□ -0.19
SDCBPO00560 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC13.87□□□□□ -0.19
SDCBPO00560 SIGLEC29P-201ENST00000599873 1114 ntBASIC13.87□□□□□ -0.19
SDCBPO00560 AL356488.2-201ENST00000602755 427 ntBASIC13.87□□□□□ -0.19
SDCBPO00560 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC13.87□□□□□ -0.19
SDCBPO00560 AC005593.1-201ENST00000624894 515 ntBASIC13.87□□□□□ -0.19
SDCBPO00560 PGM5P2-202ENST00000637225 1043 ntBASIC13.87□□□□□ -0.19
SDCBPO00560 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC13.87□□□□□ -0.19
SDCBPO00560 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
SDCBPO00560 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
SDCBPO00560 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
SDCBPO00560 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC13.87□□□□□ -0.19
SDCBPO00560 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
SDCBPO00560 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
SDCBPO00560 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
SDCBPO00560 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
SDCBPO00560 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
SDCBPO00560 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
SDCBPO00560 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
SDCBPO00560 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
SDCBPO00560 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
SDCBPO00560 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
SDCBPO00560 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
SDCBPO00560 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC13.87□□□□□ -0.19
SDCBPO00560 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC13.87□□□□□ -0.19
SDCBPO00560 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
SDCBPO00560 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC13.86□□□□□ -0.19
SDCBPO00560 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
SDCBPO00560 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
SDCBPO00560 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
SDCBPO00560 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC13.86□□□□□ -0.19
SDCBPO00560 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC13.86□□□□□ -0.19
SDCBPO00560 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC13.86□□□□□ -0.19
SDCBPO00560 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
SDCBPO00560 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
SDCBPO00560 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
SDCBPO00560 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
SDCBPO00560 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
SDCBPO00560 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC13.86□□□□□ -0.19
SDCBPO00560 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
SDCBPO00560 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
SDCBPO00560 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC13.86□□□□□ -0.19
SDCBPO00560 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
SDCBPO00560 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC13.86□□□□□ -0.19
SDCBPO00560 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC13.86□□□□□ -0.19
SDCBPO00560 PPT1-215ENST00000641471 2368 ntBASIC13.86□□□□□ -0.19
SDCBPO00560 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
SDCBPO00560 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
SDCBPO00560 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
SDCBPO00560 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
SDCBPO00560 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
SDCBPO00560 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC13.86□□□□□ -0.19
SDCBPO00560 AL450487.1-201ENST00000426799 995 ntBASIC13.86□□□□□ -0.19
SDCBPO00560 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC13.86□□□□□ -0.19
SDCBPO00560 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC13.86□□□□□ -0.19
SDCBPO00560 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
SDCBPO00560 MOK-208ENST00000519058 917 ntTSL 2 BASIC13.86□□□□□ -0.19
SDCBPO00560 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
SDCBPO00560 RPS29-206ENST00000557111 488 ntTSL 2 BASIC13.86□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 62.9 ms