Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC20.64■□□□□ 0.89
CHMP4AQ9BY43 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC20.64■□□□□ 0.89
CHMP4AQ9BY43 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC20.64■□□□□ 0.89
CHMP4AQ9BY43 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CHMP4AQ9BY43 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC20.64■□□□□ 0.89
CHMP4AQ9BY43 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC20.64■□□□□ 0.89
CHMP4AQ9BY43 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC20.64■□□□□ 0.89
CHMP4AQ9BY43 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CHMP4AQ9BY43 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
CHMP4AQ9BY43 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC20.64■□□□□ 0.89
CHMP4AQ9BY43 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC20.64■□□□□ 0.89
CHMP4AQ9BY43 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC20.64■□□□□ 0.89
CHMP4AQ9BY43 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CHMP4AQ9BY43 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CHMP4AQ9BY43 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC20.64■□□□□ 0.89
CHMP4AQ9BY43 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CHMP4AQ9BY43 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CHMP4AQ9BY43 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC20.63■□□□□ 0.89
CHMP4AQ9BY43 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
CHMP4AQ9BY43 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
CHMP4AQ9BY43 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC20.63■□□□□ 0.89
CHMP4AQ9BY43 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CHMP4AQ9BY43 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
CHMP4AQ9BY43 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CHMP4AQ9BY43 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC20.63■□□□□ 0.89
CHMP4AQ9BY43 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CHMP4AQ9BY43 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC20.63■□□□□ 0.89
CHMP4AQ9BY43 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
CHMP4AQ9BY43 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
CHMP4AQ9BY43 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
CHMP4AQ9BY43 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC20.63■□□□□ 0.89
CHMP4AQ9BY43 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC20.63■□□□□ 0.89
CHMP4AQ9BY43 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC20.63■□□□□ 0.89
CHMP4AQ9BY43 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC20.63■□□□□ 0.89
CHMP4AQ9BY43 TSPY16P-201ENST00000449843 468 ntBASIC20.63■□□□□ 0.89
CHMP4AQ9BY43 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC20.63■□□□□ 0.89
CHMP4AQ9BY43 MIR4745-201ENST00000577608 62 ntBASIC20.63■□□□□ 0.89
CHMP4AQ9BY43 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CHMP4AQ9BY43 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CHMP4AQ9BY43 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC20.63■□□□□ 0.89
CHMP4AQ9BY43 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CHMP4AQ9BY43 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CHMP4AQ9BY43 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
CHMP4AQ9BY43 FADS2-201ENST00000257261 2964 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CHMP4AQ9BY43 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CHMP4AQ9BY43 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CHMP4AQ9BY43 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CHMP4AQ9BY43 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CHMP4AQ9BY43 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CHMP4AQ9BY43 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC20.62■□□□□ 0.89
CHMP4AQ9BY43 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC20.62■□□□□ 0.89
CHMP4AQ9BY43 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC20.62■□□□□ 0.89
CHMP4AQ9BY43 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC20.62■□□□□ 0.89
CHMP4AQ9BY43 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CHMP4AQ9BY43 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC20.62■□□□□ 0.89
CHMP4AQ9BY43 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC20.62■□□□□ 0.89
CHMP4AQ9BY43 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
CHMP4AQ9BY43 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC20.62■□□□□ 0.89
CHMP4AQ9BY43 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC20.62■□□□□ 0.89
CHMP4AQ9BY43 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
CHMP4AQ9BY43 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CHMP4AQ9BY43 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CHMP4AQ9BY43 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
CHMP4AQ9BY43 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CHMP4AQ9BY43 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC20.62■□□□□ 0.89
CHMP4AQ9BY43 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
CHMP4AQ9BY43 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC20.62■□□□□ 0.89
CHMP4AQ9BY43 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC20.62■□□□□ 0.89
CHMP4AQ9BY43 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CHMP4AQ9BY43 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CHMP4AQ9BY43 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CHMP4AQ9BY43 KRT8P37-201ENST00000451609 1420 ntBASIC20.61■□□□□ 0.89
CHMP4AQ9BY43 TNRC18P3-201ENST00000441896 2691 ntBASIC20.61■□□□□ 0.89
CHMP4AQ9BY43 AL136982.4-201ENST00000437689 1740 ntBASIC20.61■□□□□ 0.89
CHMP4AQ9BY43 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CHMP4AQ9BY43 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
CHMP4AQ9BY43 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CHMP4AQ9BY43 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC20.61■□□□□ 0.89
CHMP4AQ9BY43 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
CHMP4AQ9BY43 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC20.61■□□□□ 0.89
CHMP4AQ9BY43 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC20.61■□□□□ 0.89
CHMP4AQ9BY43 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
CHMP4AQ9BY43 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CHMP4AQ9BY43 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC20.61■□□□□ 0.89
CHMP4AQ9BY43 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
CHMP4AQ9BY43 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CHMP4AQ9BY43 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CHMP4AQ9BY43 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CHMP4AQ9BY43 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CHMP4AQ9BY43 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC20.61■□□□□ 0.89
CHMP4AQ9BY43 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CHMP4AQ9BY43 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC20.61■□□□□ 0.89
CHMP4AQ9BY43 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC20.61■□□□□ 0.89
CHMP4AQ9BY43 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC20.61■□□□□ 0.89
CHMP4AQ9BY43 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CHMP4AQ9BY43 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC20.61■□□□□ 0.89
CHMP4AQ9BY43 COQ6-210ENST00000554920 649 ntTSL 3 BASIC20.61■□□□□ 0.89
CHMP4AQ9BY43 GREM1-201ENST00000560677 623 ntTSL 4 BASIC20.61■□□□□ 0.89
CHMP4AQ9BY43 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CHMP4AQ9BY43 AL844908.2-201ENST00000609461 460 ntBASIC20.61■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms