Protein–RNA interactions for Protein: Q9BT23

LIMD2, LIM domain-containing protein 2, humanhuman

Predictions only

Length 127 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD2Q9BT23 OR2C3-204ENST00000641802 8509 ntAPPRIS P1 BASIC9.77□□□□□ -0.85
LIMD2Q9BT23 VTI1B-204ENST00000554659 5351 ntAPPRIS P1 TSL 1 (best) BASIC9.77□□□□□ -0.85
LIMD2Q9BT23 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC9.77□□□□□ -0.85
LIMD2Q9BT23 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC9.77□□□□□ -0.85
LIMD2Q9BT23 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC9.77□□□□□ -0.85
LIMD2Q9BT23 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC9.77□□□□□ -0.85
LIMD2Q9BT23 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC9.77□□□□□ -0.85
LIMD2Q9BT23 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC9.77□□□□□ -0.85
LIMD2Q9BT23 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC9.77□□□□□ -0.85
LIMD2Q9BT23 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC9.77□□□□□ -0.85
LIMD2Q9BT23 SAMD4A-213ENST00000631086 6677 ntTSL 5 BASIC9.76□□□□□ -0.85
LIMD2Q9BT23 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
LIMD2Q9BT23 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
LIMD2Q9BT23 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC9.76□□□□□ -0.85
LIMD2Q9BT23 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC9.76□□□□□ -0.85
LIMD2Q9BT23 ACAP2-201ENST00000326793 7160 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
LIMD2Q9BT23 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC9.76□□□□□ -0.85
LIMD2Q9BT23 INO80-202ENST00000401393 5991 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
LIMD2Q9BT23 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC9.76□□□□□ -0.85
LIMD2Q9BT23 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC9.76□□□□□ -0.85
LIMD2Q9BT23 DAAM2-202ENST00000398904 6224 ntAPPRIS ALT1 TSL 5 BASIC9.76□□□□□ -0.85
LIMD2Q9BT23 SLC9A8-201ENST00000361573 6094 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
LIMD2Q9BT23 DNAJC27-207ENST00000534855 4831 ntTSL 1 (best) BASIC9.76□□□□□ -0.85
LIMD2Q9BT23 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC9.76□□□□□ -0.85
LIMD2Q9BT23 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
LIMD2Q9BT23 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC9.76□□□□□ -0.85
LIMD2Q9BT23 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC9.76□□□□□ -0.85
LIMD2Q9BT23 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
LIMD2Q9BT23 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC9.76□□□□□ -0.85
LIMD2Q9BT23 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
LIMD2Q9BT23 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
LIMD2Q9BT23 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC9.76□□□□□ -0.85
LIMD2Q9BT23 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC9.76□□□□□ -0.85
LIMD2Q9BT23 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC9.76□□□□□ -0.85
LIMD2Q9BT23 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC9.76□□□□□ -0.85
LIMD2Q9BT23 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC9.76□□□□□ -0.85
LIMD2Q9BT23 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC9.76□□□□□ -0.85
LIMD2Q9BT23 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC9.76□□□□□ -0.85
LIMD2Q9BT23 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC9.76□□□□□ -0.85
LIMD2Q9BT23 KRT18P56-201ENST00000507275 550 ntBASIC9.76□□□□□ -0.85
LIMD2Q9BT23 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC9.76□□□□□ -0.85
LIMD2Q9BT23 OR7E14P-202ENST00000530490 1290 ntBASIC9.76□□□□□ -0.85
LIMD2Q9BT23 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC9.76□□□□□ -0.85
LIMD2Q9BT23 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC9.76□□□□□ -0.85
LIMD2Q9BT23 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC9.76□□□□□ -0.85
LIMD2Q9BT23 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC9.76□□□□□ -0.85
LIMD2Q9BT23 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC9.76□□□□□ -0.85
LIMD2Q9BT23 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC9.76□□□□□ -0.85
LIMD2Q9BT23 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC9.76□□□□□ -0.85
LIMD2Q9BT23 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC9.76□□□□□ -0.85
LIMD2Q9BT23 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC9.76□□□□□ -0.85
LIMD2Q9BT23 IFNL4P1-201ENST00000607083 540 ntBASIC9.76□□□□□ -0.85
LIMD2Q9BT23 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC9.76□□□□□ -0.85
LIMD2Q9BT23 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC9.76□□□□□ -0.85
LIMD2Q9BT23 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC9.76□□□□□ -0.85
LIMD2Q9BT23 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC9.76□□□□□ -0.85
LIMD2Q9BT23 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC9.76□□□□□ -0.85
LIMD2Q9BT23 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC9.76□□□□□ -0.85
LIMD2Q9BT23 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
LIMD2Q9BT23 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC9.76□□□□□ -0.85
LIMD2Q9BT23 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC9.76□□□□□ -0.85
LIMD2Q9BT23 ZNF783-202ENST00000434415 4452 ntAPPRIS P1 TSL 5 BASIC9.76□□□□□ -0.85
LIMD2Q9BT23 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC9.76□□□□□ -0.85
LIMD2Q9BT23 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
LIMD2Q9BT23 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC9.76□□□□□ -0.85
LIMD2Q9BT23 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC9.76□□□□□ -0.85
LIMD2Q9BT23 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
LIMD2Q9BT23 MYLK-208ENST00000475616 5745 ntAPPRIS ALT2 TSL 1 (best) BASIC9.76□□□□□ -0.85
LIMD2Q9BT23 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
LIMD2Q9BT23 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC9.76□□□□□ -0.85
LIMD2Q9BT23 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
LIMD2Q9BT23 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC9.76□□□□□ -0.85
LIMD2Q9BT23 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC9.76□□□□□ -0.85
LIMD2Q9BT23 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
LIMD2Q9BT23 CYP2T1P-202ENST00000641596 2535 ntBASIC9.76□□□□□ -0.85
LIMD2Q9BT23 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC9.75□□□□□ -0.85
LIMD2Q9BT23 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC9.75□□□□□ -0.85
LIMD2Q9BT23 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC9.75□□□□□ -0.85
LIMD2Q9BT23 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC9.75□□□□□ -0.85
LIMD2Q9BT23 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC9.75□□□□□ -0.85
LIMD2Q9BT23 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC9.75□□□□□ -0.85
LIMD2Q9BT23 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC9.75□□□□□ -0.85
LIMD2Q9BT23 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC9.75□□□□□ -0.85
LIMD2Q9BT23 AC009690.1-201ENST00000379915 4374 ntAPPRIS P1 TSL 2 BASIC9.75□□□□□ -0.85
LIMD2Q9BT23 KIAA0513-202ENST00000538274 7381 ntTSL 2 BASIC9.75□□□□□ -0.85
LIMD2Q9BT23 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC9.75□□□□□ -0.85
LIMD2Q9BT23 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC9.75□□□□□ -0.85
LIMD2Q9BT23 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC9.75□□□□□ -0.85
LIMD2Q9BT23 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC9.75□□□□□ -0.85
LIMD2Q9BT23 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC9.75□□□□□ -0.85
LIMD2Q9BT23 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC9.75□□□□□ -0.85
LIMD2Q9BT23 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC9.75□□□□□ -0.85
LIMD2Q9BT23 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC9.75□□□□□ -0.85
LIMD2Q9BT23 NCOR2-202ENST00000404121 7175 ntTSL 5 BASIC9.75□□□□□ -0.85
LIMD2Q9BT23 AC092384.3-202ENST00000564646 2873 ntBASIC9.75□□□□□ -0.85
LIMD2Q9BT23 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC9.75□□□□□ -0.85
LIMD2Q9BT23 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC9.75□□□□□ -0.85
LIMD2Q9BT23 MYOM3-202ENST00000374434 5804 ntAPPRIS P1 TSL 1 (best) BASIC9.75□□□□□ -0.85
LIMD2Q9BT23 AL391256.1-201ENST00000443260 1855 ntBASIC9.75□□□□□ -0.85
LIMD2Q9BT23 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC9.75□□□□□ -0.85
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms