Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC16.64■□□□□ 0.25
TRIM56Q9BRZ2 PGM5P2-202ENST00000637225 1043 ntBASIC16.64■□□□□ 0.25
TRIM56Q9BRZ2 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRIM56Q9BRZ2 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC16.64■□□□□ 0.25
TRIM56Q9BRZ2 AC144831.1-201ENST00000573312 2656 ntBASIC16.64■□□□□ 0.25
TRIM56Q9BRZ2 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRIM56Q9BRZ2 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
TRIM56Q9BRZ2 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
TRIM56Q9BRZ2 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
TRIM56Q9BRZ2 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
TRIM56Q9BRZ2 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRIM56Q9BRZ2 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRIM56Q9BRZ2 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRIM56Q9BRZ2 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
TRIM56Q9BRZ2 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC16.64■□□□□ 0.25
TRIM56Q9BRZ2 AC067930.6-201ENST00000623257 4947 ntBASIC16.64■□□□□ 0.25
TRIM56Q9BRZ2 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRIM56Q9BRZ2 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
TRIM56Q9BRZ2 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC16.64■□□□□ 0.25
TRIM56Q9BRZ2 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC16.64■□□□□ 0.25
TRIM56Q9BRZ2 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC16.64■□□□□ 0.25
TRIM56Q9BRZ2 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRIM56Q9BRZ2 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC16.63■□□□□ 0.25
TRIM56Q9BRZ2 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
TRIM56Q9BRZ2 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRIM56Q9BRZ2 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC16.63■□□□□ 0.25
TRIM56Q9BRZ2 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC16.63■□□□□ 0.25
TRIM56Q9BRZ2 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC16.63■□□□□ 0.25
TRIM56Q9BRZ2 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
TRIM56Q9BRZ2 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
TRIM56Q9BRZ2 AC005622.1-201ENST00000636801 1703 ntBASIC16.63■□□□□ 0.25
TRIM56Q9BRZ2 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC16.63■□□□□ 0.25
TRIM56Q9BRZ2 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC16.63■□□□□ 0.25
TRIM56Q9BRZ2 POU5F1P6-201ENST00000466990 990 ntBASIC16.63■□□□□ 0.25
TRIM56Q9BRZ2 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC16.63■□□□□ 0.25
TRIM56Q9BRZ2 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
TRIM56Q9BRZ2 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC16.63■□□□□ 0.25
TRIM56Q9BRZ2 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC16.63■□□□□ 0.25
TRIM56Q9BRZ2 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC16.63■□□□□ 0.25
TRIM56Q9BRZ2 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC16.63■□□□□ 0.25
TRIM56Q9BRZ2 MIR4515-201ENST00000584082 81 ntBASIC16.63■□□□□ 0.25
TRIM56Q9BRZ2 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC16.63■□□□□ 0.25
TRIM56Q9BRZ2 PRKN-208ENST00000610470 531 ntTSL 2 BASIC16.63■□□□□ 0.25
TRIM56Q9BRZ2 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC16.63■□□□□ 0.25
TRIM56Q9BRZ2 PRKN-209ENST00000612485 225 ntTSL 5 BASIC16.63■□□□□ 0.25
TRIM56Q9BRZ2 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC16.63■□□□□ 0.25
TRIM56Q9BRZ2 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC16.63■□□□□ 0.25
TRIM56Q9BRZ2 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRIM56Q9BRZ2 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRIM56Q9BRZ2 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
TRIM56Q9BRZ2 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC16.63■□□□□ 0.25
TRIM56Q9BRZ2 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC16.63■□□□□ 0.25
TRIM56Q9BRZ2 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
TRIM56Q9BRZ2 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC16.63■□□□□ 0.25
TRIM56Q9BRZ2 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
TRIM56Q9BRZ2 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
TRIM56Q9BRZ2 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRIM56Q9BRZ2 BANP-201ENST00000286122 2368 ntTSL 5 BASIC16.63■□□□□ 0.25
TRIM56Q9BRZ2 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRIM56Q9BRZ2 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
TRIM56Q9BRZ2 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
TRIM56Q9BRZ2 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC16.62■□□□□ 0.25
TRIM56Q9BRZ2 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
TRIM56Q9BRZ2 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM56Q9BRZ2 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
TRIM56Q9BRZ2 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM56Q9BRZ2 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC16.62■□□□□ 0.25
TRIM56Q9BRZ2 CDC14C-201ENST00000428251 1719 ntBASIC16.62■□□□□ 0.25
TRIM56Q9BRZ2 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM56Q9BRZ2 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM56Q9BRZ2 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
TRIM56Q9BRZ2 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC16.62■□□□□ 0.25
TRIM56Q9BRZ2 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM56Q9BRZ2 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC16.62■□□□□ 0.25
TRIM56Q9BRZ2 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM56Q9BRZ2 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM56Q9BRZ2 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC16.62■□□□□ 0.25
TRIM56Q9BRZ2 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM56Q9BRZ2 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM56Q9BRZ2 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM56Q9BRZ2 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM56Q9BRZ2 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM56Q9BRZ2 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM56Q9BRZ2 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC16.62■□□□□ 0.25
TRIM56Q9BRZ2 RPS2P28-201ENST00000314255 741 ntBASIC16.62■□□□□ 0.25
TRIM56Q9BRZ2 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM56Q9BRZ2 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM56Q9BRZ2 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM56Q9BRZ2 DPM2-202ENST00000373110 738 ntTSL 2 BASIC16.62■□□□□ 0.25
TRIM56Q9BRZ2 STARD13-205ENST00000439831 945 ntTSL 2 BASIC16.62■□□□□ 0.25
TRIM56Q9BRZ2 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
TRIM56Q9BRZ2 LINC02447-202ENST00000501888 2146 ntBASIC16.62■□□□□ 0.25
TRIM56Q9BRZ2 MTRF1LP2-201ENST00000506027 1122 ntBASIC16.62■□□□□ 0.25
TRIM56Q9BRZ2 RNA5SP415-201ENST00000517246 115 ntBASIC16.62■□□□□ 0.25
TRIM56Q9BRZ2 PENK-208ENST00000523051 772 ntTSL 5 BASIC16.62■□□□□ 0.25
TRIM56Q9BRZ2 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC16.62■□□□□ 0.25
TRIM56Q9BRZ2 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM56Q9BRZ2 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM56Q9BRZ2 DBET-201ENST00000630918 3363 ntBASIC16.62■□□□□ 0.25
TRIM56Q9BRZ2 HLA-A-201ENST00000376802 1334 ntBASIC16.62■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms