Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
USP28Q96RU2 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC18.57■□□□□ 0.56
USP28Q96RU2 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
USP28Q96RU2 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC18.57■□□□□ 0.56
USP28Q96RU2 AC245100.5-201ENST00000452108 331 ntBASIC18.57■□□□□ 0.56
USP28Q96RU2 PRYP6-201ENST00000514804 343 ntBASIC18.57■□□□□ 0.56
USP28Q96RU2 SLC25A1P1-201ENST00000528351 927 ntBASIC18.57■□□□□ 0.56
USP28Q96RU2 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC18.57■□□□□ 0.56
USP28Q96RU2 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
USP28Q96RU2 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC18.57■□□□□ 0.56
USP28Q96RU2 PDPK2P-202ENST00000562415 1191 ntBASIC18.57■□□□□ 0.56
USP28Q96RU2 MIR4321-201ENST00000592276 80 ntBASIC18.57■□□□□ 0.56
USP28Q96RU2 AC068137.2-201ENST00000605408 478 ntBASIC18.57■□□□□ 0.56
USP28Q96RU2 AC099522.2-201ENST00000607001 744 ntBASIC18.57■□□□□ 0.56
USP28Q96RU2 AL365330.1-201ENST00000607459 531 ntBASIC18.57■□□□□ 0.56
USP28Q96RU2 AC092865.6-201ENST00000642101 219 ntBASIC18.57■□□□□ 0.56
USP28Q96RU2 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC18.57■□□□□ 0.56
USP28Q96RU2 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
USP28Q96RU2 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
USP28Q96RU2 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
USP28Q96RU2 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
USP28Q96RU2 CICP13-201ENST00000422015 2789 ntBASIC18.57■□□□□ 0.56
USP28Q96RU2 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC18.57■□□□□ 0.56
USP28Q96RU2 DKFZP434H168-201ENST00000567381 1905 ntBASIC18.57■□□□□ 0.56
USP28Q96RU2 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC18.56■□□□□ 0.56
USP28Q96RU2 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
USP28Q96RU2 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
USP28Q96RU2 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
USP28Q96RU2 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC18.56■□□□□ 0.56
USP28Q96RU2 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
USP28Q96RU2 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
USP28Q96RU2 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
USP28Q96RU2 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC18.56■□□□□ 0.56
USP28Q96RU2 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
USP28Q96RU2 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
USP28Q96RU2 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
USP28Q96RU2 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
USP28Q96RU2 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
USP28Q96RU2 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
USP28Q96RU2 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
USP28Q96RU2 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
USP28Q96RU2 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
USP28Q96RU2 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
USP28Q96RU2 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC18.56■□□□□ 0.56
USP28Q96RU2 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC18.56■□□□□ 0.56
USP28Q96RU2 SMN2-210ENST00000511812 867 ntTSL 2 BASIC18.56■□□□□ 0.56
USP28Q96RU2 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC18.56■□□□□ 0.56
USP28Q96RU2 AL138918.1-201ENST00000568306 659 ntBASIC18.56■□□□□ 0.56
USP28Q96RU2 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC18.56■□□□□ 0.56
USP28Q96RU2 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC18.56■□□□□ 0.56
USP28Q96RU2 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC18.56■□□□□ 0.56
USP28Q96RU2 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC18.56■□□□□ 0.56
USP28Q96RU2 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
USP28Q96RU2 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
USP28Q96RU2 AC022532.1-201ENST00000624563 1728 ntBASIC18.56■□□□□ 0.56
USP28Q96RU2 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
USP28Q96RU2 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
USP28Q96RU2 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC18.56■□□□□ 0.56
USP28Q96RU2 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC18.56■□□□□ 0.56
USP28Q96RU2 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
USP28Q96RU2 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
USP28Q96RU2 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
USP28Q96RU2 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
USP28Q96RU2 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC18.56■□□□□ 0.56
USP28Q96RU2 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC18.56■□□□□ 0.56
USP28Q96RU2 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC18.56■□□□□ 0.56
USP28Q96RU2 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
USP28Q96RU2 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC18.56■□□□□ 0.56
USP28Q96RU2 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
USP28Q96RU2 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC18.55■□□□□ 0.56
USP28Q96RU2 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
USP28Q96RU2 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
USP28Q96RU2 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
USP28Q96RU2 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC18.55■□□□□ 0.56
USP28Q96RU2 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
USP28Q96RU2 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
USP28Q96RU2 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
USP28Q96RU2 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC18.55■□□□□ 0.56
USP28Q96RU2 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
USP28Q96RU2 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
USP28Q96RU2 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
USP28Q96RU2 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
USP28Q96RU2 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC18.55■□□□□ 0.56
USP28Q96RU2 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC18.55■□□□□ 0.56
USP28Q96RU2 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
USP28Q96RU2 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC18.55■□□□□ 0.56
USP28Q96RU2 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
USP28Q96RU2 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
USP28Q96RU2 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
USP28Q96RU2 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
USP28Q96RU2 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
USP28Q96RU2 GPX1P2-201ENST00000429271 606 ntBASIC18.55■□□□□ 0.56
USP28Q96RU2 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC18.55■□□□□ 0.56
USP28Q96RU2 AC074386.1-202ENST00000463561 864 ntBASIC18.55■□□□□ 0.56
USP28Q96RU2 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC18.55■□□□□ 0.56
USP28Q96RU2 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC18.55■□□□□ 0.56
USP28Q96RU2 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC18.55■□□□□ 0.56
USP28Q96RU2 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
USP28Q96RU2 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC18.55■□□□□ 0.56
USP28Q96RU2 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC18.55■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms