Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC15.34■□□□□ 0.05
PTCHD1Q96NR3 SLBP-205ENST00000488267 987 ntTSL 2 BASIC15.34■□□□□ 0.05
PTCHD1Q96NR3 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PTCHD1Q96NR3 AC069262.1-201ENST00000539058 672 ntBASIC15.34■□□□□ 0.05
PTCHD1Q96NR3 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC15.34■□□□□ 0.05
PTCHD1Q96NR3 MIR6080-201ENST00000617359 66 ntBASIC15.34■□□□□ 0.05
PTCHD1Q96NR3 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC15.34■□□□□ 0.05
PTCHD1Q96NR3 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
PTCHD1Q96NR3 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
PTCHD1Q96NR3 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
PTCHD1Q96NR3 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PTCHD1Q96NR3 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC15.34■□□□□ 0.05
PTCHD1Q96NR3 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PTCHD1Q96NR3 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
PTCHD1Q96NR3 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
PTCHD1Q96NR3 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
PTCHD1Q96NR3 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
PTCHD1Q96NR3 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC15.34■□□□□ 0.05
PTCHD1Q96NR3 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC15.34■□□□□ 0.05
PTCHD1Q96NR3 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC15.34■□□□□ 0.05
PTCHD1Q96NR3 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC15.34■□□□□ 0.05
PTCHD1Q96NR3 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC15.34■□□□□ 0.05
PTCHD1Q96NR3 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC15.34■□□□□ 0.05
PTCHD1Q96NR3 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PTCHD1Q96NR3 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC15.34■□□□□ 0.05
PTCHD1Q96NR3 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC15.34■□□□□ 0.05
PTCHD1Q96NR3 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC15.34■□□□□ 0.05
PTCHD1Q96NR3 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
PTCHD1Q96NR3 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PTCHD1Q96NR3 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.05
PTCHD1Q96NR3 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC15.33■□□□□ 0.05
PTCHD1Q96NR3 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
PTCHD1Q96NR3 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC15.33■□□□□ 0.05
PTCHD1Q96NR3 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC15.33■□□□□ 0.05
PTCHD1Q96NR3 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.05
PTCHD1Q96NR3 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
PTCHD1Q96NR3 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PTCHD1Q96NR3 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PTCHD1Q96NR3 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
PTCHD1Q96NR3 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC15.33■□□□□ 0.04
PTCHD1Q96NR3 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
PTCHD1Q96NR3 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PTCHD1Q96NR3 PNMT-202ENST00000394246 821 ntTSL 2 BASIC15.33■□□□□ 0.04
PTCHD1Q96NR3 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC15.33■□□□□ 0.04
PTCHD1Q96NR3 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC15.33■□□□□ 0.04
PTCHD1Q96NR3 CNN2P2-201ENST00000443536 909 ntBASIC15.33■□□□□ 0.04
PTCHD1Q96NR3 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC15.33■□□□□ 0.04
PTCHD1Q96NR3 FAM86GP-201ENST00000448322 971 ntBASIC15.33■□□□□ 0.04
PTCHD1Q96NR3 CNN2P3-201ENST00000450201 906 ntBASIC15.33■□□□□ 0.04
PTCHD1Q96NR3 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PTCHD1Q96NR3 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
PTCHD1Q96NR3 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC15.33■□□□□ 0.04
PTCHD1Q96NR3 AC024267.1-201ENST00000582320 895 ntBASIC15.33■□□□□ 0.04
PTCHD1Q96NR3 AC003101.2-201ENST00000612557 442 ntBASIC15.33■□□□□ 0.04
PTCHD1Q96NR3 AC018529.1-201ENST00000613063 361 ntBASIC15.33■□□□□ 0.04
PTCHD1Q96NR3 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
PTCHD1Q96NR3 AC106028.4-201ENST00000614509 607 ntBASIC15.33■□□□□ 0.04
PTCHD1Q96NR3 AL136317.3-201ENST00000618497 906 ntBASIC15.33■□□□□ 0.04
PTCHD1Q96NR3 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
PTCHD1Q96NR3 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PTCHD1Q96NR3 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
PTCHD1Q96NR3 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PTCHD1Q96NR3 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
PTCHD1Q96NR3 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PTCHD1Q96NR3 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC15.33■□□□□ 0.04
PTCHD1Q96NR3 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
PTCHD1Q96NR3 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC15.33■□□□□ 0.04
PTCHD1Q96NR3 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PTCHD1Q96NR3 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
PTCHD1Q96NR3 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
PTCHD1Q96NR3 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
PTCHD1Q96NR3 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PTCHD1Q96NR3 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC15.33■□□□□ 0.04
PTCHD1Q96NR3 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PTCHD1Q96NR3 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC15.33■□□□□ 0.04
PTCHD1Q96NR3 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC15.32■□□□□ 0.04
PTCHD1Q96NR3 AC008677.1-201ENST00000519230 1561 ntBASIC15.32■□□□□ 0.04
PTCHD1Q96NR3 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PTCHD1Q96NR3 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
PTCHD1Q96NR3 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
PTCHD1Q96NR3 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PTCHD1Q96NR3 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC15.32■□□□□ 0.04
PTCHD1Q96NR3 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
PTCHD1Q96NR3 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
PTCHD1Q96NR3 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC15.32■□□□□ 0.04
PTCHD1Q96NR3 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
PTCHD1Q96NR3 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC15.32■□□□□ 0.04
PTCHD1Q96NR3 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
PTCHD1Q96NR3 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC15.32■□□□□ 0.04
PTCHD1Q96NR3 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
PTCHD1Q96NR3 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC15.32■□□□□ 0.04
PTCHD1Q96NR3 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PTCHD1Q96NR3 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
PTCHD1Q96NR3 AC008741.2-201ENST00000612792 3115 ntBASIC15.32■□□□□ 0.04
PTCHD1Q96NR3 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PTCHD1Q96NR3 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
PTCHD1Q96NR3 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PTCHD1Q96NR3 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC15.32■□□□□ 0.04
PTCHD1Q96NR3 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC15.32■□□□□ 0.04
PTCHD1Q96NR3 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 71.2 ms