Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
TTC28Q96AY4 LINC01451-201ENST00000623792 534 ntBASIC16.11■□□□□ 0.17
TTC28Q96AY4 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC16.11■□□□□ 0.17
TTC28Q96AY4 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC16.11■□□□□ 0.17
TTC28Q96AY4 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
TTC28Q96AY4 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
TTC28Q96AY4 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC16.11■□□□□ 0.17
TTC28Q96AY4 ZNF333-209ENST00000601134 1392 ntTSL 5 BASIC16.11■□□□□ 0.17
TTC28Q96AY4 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
TTC28Q96AY4 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TTC28Q96AY4 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TTC28Q96AY4 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
TTC28Q96AY4 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
TTC28Q96AY4 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC16.11■□□□□ 0.17
TTC28Q96AY4 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
TTC28Q96AY4 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC16.11■□□□□ 0.17
TTC28Q96AY4 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC16.11■□□□□ 0.17
TTC28Q96AY4 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC16.11■□□□□ 0.17
TTC28Q96AY4 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
TTC28Q96AY4 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC16.11■□□□□ 0.17
TTC28Q96AY4 OR9I1-201ENST00000302610 945 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
TTC28Q96AY4 RN7SKP214-201ENST00000364208 315 ntBASIC16.11■□□□□ 0.17
TTC28Q96AY4 AL354877.1-201ENST00000424412 413 ntBASIC16.11■□□□□ 0.17
TTC28Q96AY4 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
TTC28Q96AY4 TUBB8P8-201ENST00000458717 1058 ntBASIC16.11■□□□□ 0.17
TTC28Q96AY4 KRT16P3-202ENST00000580113 1012 ntTSL 3 BASIC16.11■□□□□ 0.17
TTC28Q96AY4 KRT16P1-203ENST00000581027 1012 ntTSL 5 BASIC16.11■□□□□ 0.17
TTC28Q96AY4 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
TTC28Q96AY4 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC16.11■□□□□ 0.17
TTC28Q96AY4 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
TTC28Q96AY4 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
TTC28Q96AY4 BOC-212ENST00000485230 2173 ntTSL 2 BASIC16.11■□□□□ 0.17
TTC28Q96AY4 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TTC28Q96AY4 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC16.11■□□□□ 0.17
TTC28Q96AY4 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC16.11■□□□□ 0.17
TTC28Q96AY4 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC16.11■□□□□ 0.17
TTC28Q96AY4 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TTC28Q96AY4 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
TTC28Q96AY4 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
TTC28Q96AY4 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
TTC28Q96AY4 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TTC28Q96AY4 UROS-201ENST00000368774 744 ntTSL 2 BASIC16.1■□□□□ 0.17
TTC28Q96AY4 DARS-AS1-204ENST00000444406 442 ntTSL 2 BASIC16.1■□□□□ 0.17
TTC28Q96AY4 AC007319.1-201ENST00000453517 802 ntTSL 3 BASIC16.1■□□□□ 0.17
TTC28Q96AY4 DMKN-256ENST00000492341 738 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
TTC28Q96AY4 ALG1L6P-201ENST00000515248 758 ntBASIC16.1■□□□□ 0.17
TTC28Q96AY4 PARD6G-AS1-205ENST00000589574 647 ntTSL 3 BASIC16.1■□□□□ 0.17
TTC28Q96AY4 MYOZ3-209ENST00000615557 1031 ntTSL 2 BASIC16.1■□□□□ 0.17
TTC28Q96AY4 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TTC28Q96AY4 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
TTC28Q96AY4 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
TTC28Q96AY4 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TTC28Q96AY4 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC16.1■□□□□ 0.17
TTC28Q96AY4 WIZP1-201ENST00000531444 2299 ntBASIC16.1■□□□□ 0.17
TTC28Q96AY4 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TTC28Q96AY4 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC16.1■□□□□ 0.17
TTC28Q96AY4 KLK6-201ENST00000310157 1511 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TTC28Q96AY4 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
TTC28Q96AY4 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC16.1■□□□□ 0.17
TTC28Q96AY4 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC16.1■□□□□ 0.17
TTC28Q96AY4 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
TTC28Q96AY4 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
TTC28Q96AY4 AC074338.1-201ENST00000416825 156 ntBASIC16.1■□□□□ 0.17
TTC28Q96AY4 HIST2H2BB-201ENST00000449108 381 ntBASIC16.1■□□□□ 0.17
TTC28Q96AY4 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC16.1■□□□□ 0.17
TTC28Q96AY4 AC116345.2-201ENST00000512837 523 ntBASIC16.1■□□□□ 0.17
TTC28Q96AY4 NPTN-204ENST00000562924 1094 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
TTC28Q96AY4 FAM104A-206ENST00000583024 417 ntTSL 3 BASIC16.1■□□□□ 0.17
TTC28Q96AY4 ETV2-208ENST00000621247 941 ntTSL 5 BASIC16.1■□□□□ 0.17
TTC28Q96AY4 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TTC28Q96AY4 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TTC28Q96AY4 LINC02537-201ENST00000635943 1367 ntTSL 4 BASIC16.1■□□□□ 0.17
TTC28Q96AY4 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
TTC28Q96AY4 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TTC28Q96AY4 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TTC28Q96AY4 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TTC28Q96AY4 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TTC28Q96AY4 AC006277.1-201ENST00000624348 1610 ntBASIC16.1■□□□□ 0.17
TTC28Q96AY4 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TTC28Q96AY4 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TTC28Q96AY4 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
TTC28Q96AY4 TTPAL-203ENST00000372906 1139 ntTSL 3 BASIC16.09■□□□□ 0.17
TTC28Q96AY4 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC16.09■□□□□ 0.17
TTC28Q96AY4 HLA-DPA2-205ENST00000433582 733 ntBASIC16.09■□□□□ 0.17
TTC28Q96AY4 PSMD4P1-201ENST00000433951 1109 ntBASIC16.09■□□□□ 0.17
TTC28Q96AY4 AC104073.2-201ENST00000453737 312 ntBASIC16.09■□□□□ 0.17
TTC28Q96AY4 AC130709.1-201ENST00000484779 1212 ntBASIC16.09■□□□□ 0.17
TTC28Q96AY4 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
TTC28Q96AY4 AC079336.4-201ENST00000584219 408 ntTSL 2 BASIC16.09■□□□□ 0.17
TTC28Q96AY4 AC005901.1-201ENST00000592766 552 ntTSL 4 BASIC16.09■□□□□ 0.17
TTC28Q96AY4 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
TTC28Q96AY4 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC16.09■□□□□ 0.17
TTC28Q96AY4 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TTC28Q96AY4 AC012317.2-201ENST00000623305 2251 ntBASIC16.09■□□□□ 0.17
TTC28Q96AY4 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TTC28Q96AY4 KRT8P39-201ENST00000396270 1433 ntBASIC16.09■□□□□ 0.17
TTC28Q96AY4 KRT8P35-201ENST00000483942 1338 ntBASIC16.09■□□□□ 0.17
TTC28Q96AY4 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TTC28Q96AY4 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TTC28Q96AY4 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms