Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
PKNOX1P55347 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
PKNOX1P55347 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
PKNOX1P55347 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC16■□□□□ 0.15
PKNOX1P55347 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC16■□□□□ 0.15
PKNOX1P55347 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC16■□□□□ 0.15
PKNOX1P55347 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC16■□□□□ 0.15
PKNOX1P55347 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC16■□□□□ 0.15
PKNOX1P55347 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
PKNOX1P55347 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
PKNOX1P55347 WARS-232ENST00000556645 2508 ntTSL 5 BASIC16■□□□□ 0.15
PKNOX1P55347 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
PKNOX1P55347 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC16■□□□□ 0.15
PKNOX1P55347 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC16■□□□□ 0.15
PKNOX1P55347 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC16■□□□□ 0.15
PKNOX1P55347 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC16■□□□□ 0.15
PKNOX1P55347 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
PKNOX1P55347 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC16■□□□□ 0.15
PKNOX1P55347 MED22-202ENST00000371999 987 ntTSL 3 BASIC16■□□□□ 0.15
PKNOX1P55347 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
PKNOX1P55347 CD99-202ENST00000381180 530 ntTSL 2 BASIC16■□□□□ 0.15
PKNOX1P55347 RNU1-129P-201ENST00000384064 167 ntBASIC16■□□□□ 0.15
PKNOX1P55347 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC16■□□□□ 0.15
PKNOX1P55347 PRSS29P-201ENST00000440800 595 ntBASIC16■□□□□ 0.15
PKNOX1P55347 EMBP1-201ENST00000458200 901 ntBASIC16■□□□□ 0.15
PKNOX1P55347 KRT18P56-201ENST00000507275 550 ntBASIC16■□□□□ 0.15
PKNOX1P55347 MOK-208ENST00000519058 917 ntTSL 2 BASIC16■□□□□ 0.15
PKNOX1P55347 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC16■□□□□ 0.15
PKNOX1P55347 AL160237.2-201ENST00000556165 472 ntBASIC16■□□□□ 0.15
PKNOX1P55347 U1.21-201ENST00000580816 167 ntBASIC16■□□□□ 0.15
PKNOX1P55347 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
PKNOX1P55347 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
PKNOX1P55347 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
PKNOX1P55347 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC16■□□□□ 0.15
PKNOX1P55347 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC16■□□□□ 0.15
PKNOX1P55347 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC16■□□□□ 0.15
PKNOX1P55347 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
PKNOX1P55347 AC005622.1-201ENST00000636801 1703 ntBASIC15.99■□□□□ 0.15
PKNOX1P55347 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
PKNOX1P55347 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC15.99■□□□□ 0.15
PKNOX1P55347 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
PKNOX1P55347 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
PKNOX1P55347 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
PKNOX1P55347 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
PKNOX1P55347 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
PKNOX1P55347 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
PKNOX1P55347 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC15.99■□□□□ 0.15
PKNOX1P55347 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
PKNOX1P55347 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
PKNOX1P55347 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC15.99■□□□□ 0.15
PKNOX1P55347 IPPK-202ENST00000375522 882 ntTSL 3 BASIC15.99■□□□□ 0.15
PKNOX1P55347 CENPM-204ENST00000402420 688 ntTSL 5 BASIC15.99■□□□□ 0.15
PKNOX1P55347 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
PKNOX1P55347 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
PKNOX1P55347 SLC4A1APP2-201ENST00000424054 1259 ntBASIC15.99■□□□□ 0.15
PKNOX1P55347 CXCL1P1-201ENST00000502804 216 ntBASIC15.99■□□□□ 0.15
PKNOX1P55347 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC15.99■□□□□ 0.15
PKNOX1P55347 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC15.99■□□□□ 0.15
PKNOX1P55347 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC15.99■□□□□ 0.15
PKNOX1P55347 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
PKNOX1P55347 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC15.99■□□□□ 0.15
PKNOX1P55347 VPS51-217ENST00000639871 243 ntTSL 5 BASIC15.99■□□□□ 0.15
PKNOX1P55347 AL645728.2-201ENST00000641974 660 ntBASIC15.99■□□□□ 0.15
PKNOX1P55347 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
PKNOX1P55347 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC15.99■□□□□ 0.15
PKNOX1P55347 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
PKNOX1P55347 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
PKNOX1P55347 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
PKNOX1P55347 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
PKNOX1P55347 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
PKNOX1P55347 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC15.99■□□□□ 0.15
PKNOX1P55347 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
PKNOX1P55347 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PKNOX1P55347 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PKNOX1P55347 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
PKNOX1P55347 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
PKNOX1P55347 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PKNOX1P55347 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
PKNOX1P55347 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PKNOX1P55347 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
PKNOX1P55347 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PKNOX1P55347 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
PKNOX1P55347 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC15.98■□□□□ 0.15
PKNOX1P55347 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
PKNOX1P55347 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
PKNOX1P55347 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
PKNOX1P55347 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
PKNOX1P55347 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PKNOX1P55347 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
PKNOX1P55347 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
PKNOX1P55347 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
PKNOX1P55347 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PKNOX1P55347 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC15.98■□□□□ 0.15
PKNOX1P55347 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
PKNOX1P55347 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
PKNOX1P55347 PMS2P4-201ENST00000412466 1052 ntBASIC15.98■□□□□ 0.15
PKNOX1P55347 CDC14C-201ENST00000428251 1719 ntBASIC15.98■□□□□ 0.15
PKNOX1P55347 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
PKNOX1P55347 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC15.98■□□□□ 0.15
PKNOX1P55347 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC15.98■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms