Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC13.59□□□□□ -0.23
HOXA1P49639 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
HOXA1P49639 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC13.59□□□□□ -0.23
HOXA1P49639 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
HOXA1P49639 SBF1P1-201ENST00000444527 5631 ntBASIC13.59□□□□□ -0.23
HOXA1P49639 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC13.59□□□□□ -0.23
HOXA1P49639 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
HOXA1P49639 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC13.59□□□□□ -0.23
HOXA1P49639 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
HOXA1P49639 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC13.59□□□□□ -0.23
HOXA1P49639 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC13.59□□□□□ -0.23
HOXA1P49639 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC13.59□□□□□ -0.23
HOXA1P49639 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC13.59□□□□□ -0.23
HOXA1P49639 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
HOXA1P49639 AMT-206ENST00000458307 1860 ntTSL 2 BASIC13.59□□□□□ -0.23
HOXA1P49639 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
HOXA1P49639 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
HOXA1P49639 KHNYN-201ENST00000251343 6725 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
HOXA1P49639 GCK-202ENST00000345378 2421 ntTSL 2 BASIC13.59□□□□□ -0.23
HOXA1P49639 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
HOXA1P49639 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
HOXA1P49639 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
HOXA1P49639 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC13.58□□□□□ -0.23
HOXA1P49639 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC13.58□□□□□ -0.23
HOXA1P49639 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC13.58□□□□□ -0.23
HOXA1P49639 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC13.58□□□□□ -0.23
HOXA1P49639 PCDHA3-202ENST00000532566 4594 ntBASIC13.58□□□□□ -0.23
HOXA1P49639 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
HOXA1P49639 AC097637.2-201ENST00000624096 1997 ntBASIC13.58□□□□□ -0.24
HOXA1P49639 MLLT10-201ENST00000307729 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
HOXA1P49639 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
HOXA1P49639 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC13.58□□□□□ -0.24
HOXA1P49639 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
HOXA1P49639 AC106881.1-201ENST00000605849 3329 ntBASIC13.58□□□□□ -0.24
HOXA1P49639 RBPMS-201ENST00000287771 2974 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
HOXA1P49639 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC13.58□□□□□ -0.24
HOXA1P49639 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
HOXA1P49639 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC13.58□□□□□ -0.24
HOXA1P49639 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
HOXA1P49639 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
HOXA1P49639 SYNRG-225ENST00000619541 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
HOXA1P49639 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
HOXA1P49639 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.24
HOXA1P49639 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
HOXA1P49639 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
HOXA1P49639 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
HOXA1P49639 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
HOXA1P49639 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC13.58□□□□□ -0.24
HOXA1P49639 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC13.58□□□□□ -0.24
HOXA1P49639 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC13.58□□□□□ -0.24
HOXA1P49639 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC13.58□□□□□ -0.24
HOXA1P49639 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC13.58□□□□□ -0.24
HOXA1P49639 HLA-J-202ENST00000469281 1241 ntBASIC13.58□□□□□ -0.24
HOXA1P49639 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC13.58□□□□□ -0.24
HOXA1P49639 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC13.58□□□□□ -0.24
HOXA1P49639 LTBR-211ENST00000543190 785 ntTSL 3 BASIC13.58□□□□□ -0.24
HOXA1P49639 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC13.58□□□□□ -0.24
HOXA1P49639 AP005901.3-202ENST00000581653 237 ntBASIC13.58□□□□□ -0.24
HOXA1P49639 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.24
HOXA1P49639 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC13.58□□□□□ -0.24
HOXA1P49639 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
HOXA1P49639 FOS-208ENST00000555686 1496 ntTSL 2 BASIC13.58□□□□□ -0.24
HOXA1P49639 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
HOXA1P49639 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
HOXA1P49639 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC13.58□□□□□ -0.24
HOXA1P49639 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
HOXA1P49639 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
HOXA1P49639 NUTM2A-202ENST00000381707 3290 ntAPPRIS P2 TSL 1 (best) BASIC13.58□□□□□ -0.24
HOXA1P49639 NUTM2B-203ENST00000429828 3292 ntAPPRIS P2 TSL 5 BASIC13.58□□□□□ -0.24
HOXA1P49639 KIF26B-202ENST00000407071 7287 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
HOXA1P49639 AC138028.2-202ENST00000567968 4528 ntTSL 2 BASIC13.58□□□□□ -0.24
HOXA1P49639 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC13.58□□□□□ -0.24
HOXA1P49639 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
HOXA1P49639 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
HOXA1P49639 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
HOXA1P49639 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
HOXA1P49639 KIF6-203ENST00000394362 2394 ntTSL 5 BASIC13.58□□□□□ -0.24
HOXA1P49639 P2RY1-201ENST00000305097 6747 ntAPPRIS P1 BASIC13.58□□□□□ -0.24
HOXA1P49639 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
HOXA1P49639 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
HOXA1P49639 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC13.58□□□□□ -0.24
HOXA1P49639 AC233702.3-201ENST00000578656 1387 ntBASIC13.58□□□□□ -0.24
HOXA1P49639 ZKSCAN2-201ENST00000328086 7523 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
HOXA1P49639 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
HOXA1P49639 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
HOXA1P49639 HELZ2-204ENST00000467148 8064 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
HOXA1P49639 AC148477.5-201ENST00000625164 1645 ntBASIC13.57□□□□□ -0.24
HOXA1P49639 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
HOXA1P49639 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC13.57□□□□□ -0.24
HOXA1P49639 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
HOXA1P49639 MARC1-201ENST00000366910 7439 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
HOXA1P49639 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC13.57□□□□□ -0.24
HOXA1P49639 ANKMY1-204ENST00000391987 3221 ntTSL 5 BASIC13.57□□□□□ -0.24
HOXA1P49639 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
HOXA1P49639 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
HOXA1P49639 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
HOXA1P49639 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
HOXA1P49639 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC13.57□□□□□ -0.24
HOXA1P49639 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
HOXA1P49639 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 57 ms