Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PTPN9P43378 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC16.86■□□□□ 0.29
PTPN9P43378 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PTPN9P43378 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
PTPN9P43378 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
PTPN9P43378 GOLGA6L17P-202ENST00000614358 1398 ntBASIC16.86■□□□□ 0.29
PTPN9P43378 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PTPN9P43378 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PTPN9P43378 AL691432.1-201ENST00000596308 1422 ntBASIC16.86■□□□□ 0.29
PTPN9P43378 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PTPN9P43378 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PTPN9P43378 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC16.85■□□□□ 0.29
PTPN9P43378 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
PTPN9P43378 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC16.85■□□□□ 0.29
PTPN9P43378 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PTPN9P43378 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC16.85■□□□□ 0.29
PTPN9P43378 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
PTPN9P43378 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
PTPN9P43378 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
PTPN9P43378 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PTPN9P43378 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
PTPN9P43378 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PTPN9P43378 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
PTPN9P43378 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PTPN9P43378 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
PTPN9P43378 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
PTPN9P43378 RPL30-202ENST00000396070 440 ntTSL 2 BASIC16.85■□□□□ 0.29
PTPN9P43378 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC16.85■□□□□ 0.29
PTPN9P43378 RBPMS2P1-201ENST00000437762 623 ntBASIC16.85■□□□□ 0.29
PTPN9P43378 SPDYE14P-201ENST00000442619 822 ntBASIC16.85■□□□□ 0.29
PTPN9P43378 DNAJB3-202ENST00000449667 1266 ntBASIC16.85■□□□□ 0.29
PTPN9P43378 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC16.85■□□□□ 0.29
PTPN9P43378 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC16.85■□□□□ 0.29
PTPN9P43378 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PTPN9P43378 AC243562.2-201ENST00000561247 970 ntBASIC16.85■□□□□ 0.29
PTPN9P43378 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC16.85■□□□□ 0.29
PTPN9P43378 AC027612.4-201ENST00000605371 583 ntBASIC16.85■□□□□ 0.29
PTPN9P43378 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC16.85■□□□□ 0.29
PTPN9P43378 RAB34-224ENST00000636513 888 ntTSL 5 BASIC16.85■□□□□ 0.29
PTPN9P43378 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PTPN9P43378 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PTPN9P43378 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC16.85■□□□□ 0.29
PTPN9P43378 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PTPN9P43378 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PTPN9P43378 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC16.85■□□□□ 0.29
PTPN9P43378 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PTPN9P43378 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
PTPN9P43378 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
PTPN9P43378 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
PTPN9P43378 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PTPN9P43378 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC16.85■□□□□ 0.29
PTPN9P43378 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC16.84■□□□□ 0.29
PTPN9P43378 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC16.84■□□□□ 0.29
PTPN9P43378 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
PTPN9P43378 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
PTPN9P43378 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC16.84■□□□□ 0.29
PTPN9P43378 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC16.84■□□□□ 0.29
PTPN9P43378 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC16.84■□□□□ 0.29
PTPN9P43378 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
PTPN9P43378 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC16.84■□□□□ 0.29
PTPN9P43378 LTF-203ENST00000426532 2494 ntTSL 2 BASIC16.84■□□□□ 0.29
PTPN9P43378 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
PTPN9P43378 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
PTPN9P43378 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC16.84■□□□□ 0.29
PTPN9P43378 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC16.84■□□□□ 0.29
PTPN9P43378 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
PTPN9P43378 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
PTPN9P43378 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC16.84■□□□□ 0.29
PTPN9P43378 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC16.84■□□□□ 0.29
PTPN9P43378 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
PTPN9P43378 SNHG9-202ENST00000564014 471 ntBASIC16.84■□□□□ 0.29
PTPN9P43378 AC026150.2-201ENST00000564693 1156 ntBASIC16.84■□□□□ 0.29
PTPN9P43378 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC16.84■□□□□ 0.29
PTPN9P43378 AC018529.1-201ENST00000613063 361 ntBASIC16.84■□□□□ 0.29
PTPN9P43378 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC16.84■□□□□ 0.29
PTPN9P43378 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
PTPN9P43378 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC16.84■□□□□ 0.29
PTPN9P43378 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
PTPN9P43378 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
PTPN9P43378 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC16.84■□□□□ 0.29
PTPN9P43378 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
PTPN9P43378 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC16.84■□□□□ 0.29
PTPN9P43378 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
PTPN9P43378 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC16.84■□□□□ 0.29
PTPN9P43378 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC16.84■□□□□ 0.29
PTPN9P43378 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
PTPN9P43378 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
PTPN9P43378 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
PTPN9P43378 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.29
PTPN9P43378 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
PTPN9P43378 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.29
PTPN9P43378 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PTPN9P43378 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
PTPN9P43378 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PTPN9P43378 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC16.83■□□□□ 0.28
PTPN9P43378 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PTPN9P43378 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
PTPN9P43378 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
PTPN9P43378 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
PTPN9P43378 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms