Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC16.4■□□□□ 0.22
PTPN4P29074 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
PTPN4P29074 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
PTPN4P29074 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC16.4■□□□□ 0.22
PTPN4P29074 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PTPN4P29074 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
PTPN4P29074 HNRNPA1P28-201ENST00000424481 961 ntBASIC16.4■□□□□ 0.22
PTPN4P29074 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC16.4■□□□□ 0.22
PTPN4P29074 RPS15P9-201ENST00000494093 319 ntBASIC16.4■□□□□ 0.22
PTPN4P29074 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
PTPN4P29074 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC16.4■□□□□ 0.22
PTPN4P29074 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC16.4■□□□□ 0.22
PTPN4P29074 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC16.4■□□□□ 0.22
PTPN4P29074 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC16.4■□□□□ 0.22
PTPN4P29074 STK25P1-201ENST00000585406 838 ntBASIC16.4■□□□□ 0.22
PTPN4P29074 AC008667.4-201ENST00000607370 168 ntBASIC16.4■□□□□ 0.22
PTPN4P29074 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PTPN4P29074 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PTPN4P29074 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC16.4■□□□□ 0.22
PTPN4P29074 AP002414.2-201ENST00000591780 3365 ntBASIC16.4■□□□□ 0.22
PTPN4P29074 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PTPN4P29074 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PTPN4P29074 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC16.4■□□□□ 0.22
PTPN4P29074 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC16.4■□□□□ 0.22
PTPN4P29074 LINC00895-201ENST00000629028 1637 ntBASIC16.4■□□□□ 0.22
PTPN4P29074 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC16.4■□□□□ 0.22
PTPN4P29074 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC16.4■□□□□ 0.22
PTPN4P29074 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC16.39■□□□□ 0.22
PTPN4P29074 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.22
PTPN4P29074 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
PTPN4P29074 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC16.39■□□□□ 0.21
PTPN4P29074 GGT4P-201ENST00000623672 1708 ntBASIC16.39■□□□□ 0.21
PTPN4P29074 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PTPN4P29074 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PTPN4P29074 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC16.39■□□□□ 0.21
PTPN4P29074 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
PTPN4P29074 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC16.39■□□□□ 0.21
PTPN4P29074 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC16.39■□□□□ 0.21
PTPN4P29074 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC16.39■□□□□ 0.21
PTPN4P29074 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
PTPN4P29074 AL009178.2-201ENST00000597278 2719 ntBASIC16.39■□□□□ 0.21
PTPN4P29074 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PTPN4P29074 RPS8P6-201ENST00000426177 609 ntBASIC16.39■□□□□ 0.21
PTPN4P29074 KRT18P2-201ENST00000447938 1258 ntBASIC16.39■□□□□ 0.21
PTPN4P29074 AC004967.1-201ENST00000453589 447 ntBASIC16.39■□□□□ 0.21
PTPN4P29074 AC108073.2-201ENST00000464002 357 ntBASIC16.39■□□□□ 0.21
PTPN4P29074 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC16.39■□□□□ 0.21
PTPN4P29074 IGHV3-65-201ENST00000523210 341 ntBASIC16.39■□□□□ 0.21
PTPN4P29074 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC16.39■□□□□ 0.21
PTPN4P29074 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC16.39■□□□□ 0.21
PTPN4P29074 MIR4751-201ENST00000578027 74 ntBASIC16.39■□□□□ 0.21
PTPN4P29074 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC16.39■□□□□ 0.21
PTPN4P29074 AP001160.2-201ENST00000596071 487 ntBASIC16.39■□□□□ 0.21
PTPN4P29074 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC16.39■□□□□ 0.21
PTPN4P29074 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PTPN4P29074 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC16.39■□□□□ 0.21
PTPN4P29074 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC16.39■□□□□ 0.21
PTPN4P29074 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PTPN4P29074 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PTPN4P29074 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC16.39■□□□□ 0.21
PTPN4P29074 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PTPN4P29074 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
PTPN4P29074 AC023157.3-201ENST00000619086 2088 ntBASIC16.39■□□□□ 0.21
PTPN4P29074 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PTPN4P29074 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC16.39■□□□□ 0.21
PTPN4P29074 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PTPN4P29074 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PTPN4P29074 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
PTPN4P29074 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PTPN4P29074 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
PTPN4P29074 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PTPN4P29074 AC002310.6-201ENST00000624451 1377 ntBASIC16.38■□□□□ 0.21
PTPN4P29074 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
PTPN4P29074 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
PTPN4P29074 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC16.38■□□□□ 0.21
PTPN4P29074 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
PTPN4P29074 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC16.38■□□□□ 0.21
PTPN4P29074 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
PTPN4P29074 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PTPN4P29074 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC16.38■□□□□ 0.21
PTPN4P29074 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
PTPN4P29074 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
PTPN4P29074 AC006449.6-201ENST00000612330 2296 ntBASIC16.38■□□□□ 0.21
PTPN4P29074 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC16.38■□□□□ 0.21
PTPN4P29074 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
PTPN4P29074 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC16.38■□□□□ 0.21
PTPN4P29074 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
PTPN4P29074 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC16.38■□□□□ 0.21
PTPN4P29074 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC16.38■□□□□ 0.21
PTPN4P29074 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PTPN4P29074 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
PTPN4P29074 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PTPN4P29074 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PTPN4P29074 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC16.38■□□□□ 0.21
PTPN4P29074 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
PTPN4P29074 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
PTPN4P29074 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC16.38■□□□□ 0.21
PTPN4P29074 PRSS29P-201ENST00000440800 595 ntBASIC16.38■□□□□ 0.21
PTPN4P29074 VN2R19P-201ENST00000442399 1052 ntBASIC16.38■□□□□ 0.21
PTPN4P29074 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 86 ms