Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
USF1P22415 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
USF1P22415 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC13.8□□□□□ -0.2
USF1P22415 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
USF1P22415 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
USF1P22415 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
USF1P22415 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
USF1P22415 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
USF1P22415 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
USF1P22415 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
USF1P22415 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
USF1P22415 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC13.8□□□□□ -0.2
USF1P22415 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
USF1P22415 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
USF1P22415 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC13.8□□□□□ -0.2
USF1P22415 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
USF1P22415 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
USF1P22415 STX3-203ENST00000529177 1571 ntTSL 2 BASIC13.8□□□□□ -0.2
USF1P22415 AC022144.1-201ENST00000602255 1580 ntBASIC13.8□□□□□ -0.2
USF1P22415 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
USF1P22415 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC13.8□□□□□ -0.2
USF1P22415 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
USF1P22415 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC13.8□□□□□ -0.2
USF1P22415 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC13.8□□□□□ -0.2
USF1P22415 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC13.8□□□□□ -0.2
USF1P22415 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
USF1P22415 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC13.8□□□□□ -0.2
USF1P22415 GSAP-205ENST00000430584 600 ntTSL 5 BASIC13.8□□□□□ -0.2
USF1P22415 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC13.8□□□□□ -0.2
USF1P22415 HLA-V-204ENST00000476601 1289 ntBASIC13.8□□□□□ -0.2
USF1P22415 AP002490.2-201ENST00000524791 560 ntBASIC13.8□□□□□ -0.2
USF1P22415 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC13.8□□□□□ -0.2
USF1P22415 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC13.8□□□□□ -0.2
USF1P22415 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
USF1P22415 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC13.8□□□□□ -0.2
USF1P22415 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
USF1P22415 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC13.8□□□□□ -0.2
USF1P22415 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC13.8□□□□□ -0.2
USF1P22415 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
USF1P22415 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC13.8□□□□□ -0.2
USF1P22415 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC13.8□□□□□ -0.2
USF1P22415 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC13.8□□□□□ -0.2
USF1P22415 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
USF1P22415 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
USF1P22415 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
USF1P22415 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC13.79□□□□□ -0.2
USF1P22415 ACE-204ENST00000428043 5120 ntTSL 2 BASIC13.79□□□□□ -0.2
USF1P22415 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
USF1P22415 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
USF1P22415 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
USF1P22415 UBALD1-205ENST00000590891 2641 ntBASIC13.79□□□□□ -0.2
USF1P22415 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
USF1P22415 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
USF1P22415 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC13.79□□□□□ -0.2
USF1P22415 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
USF1P22415 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
USF1P22415 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
USF1P22415 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
USF1P22415 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC13.79□□□□□ -0.2
USF1P22415 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
USF1P22415 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
USF1P22415 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC13.79□□□□□ -0.2
USF1P22415 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
USF1P22415 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC13.79□□□□□ -0.2
USF1P22415 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
USF1P22415 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
USF1P22415 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC13.79□□□□□ -0.2
USF1P22415 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
USF1P22415 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
USF1P22415 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC13.79□□□□□ -0.2
USF1P22415 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
USF1P22415 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
USF1P22415 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC13.79□□□□□ -0.2
USF1P22415 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC13.79□□□□□ -0.2
USF1P22415 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC13.79□□□□□ -0.2
USF1P22415 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC13.79□□□□□ -0.2
USF1P22415 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC13.79□□□□□ -0.2
USF1P22415 AL138828.2-201ENST00000615812 383 ntBASIC13.79□□□□□ -0.2
USF1P22415 SPDYE12P-201ENST00000618416 771 ntBASIC13.79□□□□□ -0.2
USF1P22415 GPER1-207ENST00000619052 571 ntTSL 2 BASIC13.79□□□□□ -0.2
USF1P22415 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
USF1P22415 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC13.79□□□□□ -0.2
USF1P22415 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
USF1P22415 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
USF1P22415 TDG-209ENST00000544861 1387 ntTSL 2 BASIC13.79□□□□□ -0.2
USF1P22415 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
USF1P22415 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
USF1P22415 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
USF1P22415 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC13.79□□□□□ -0.2
USF1P22415 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
USF1P22415 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
USF1P22415 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
USF1P22415 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC13.79□□□□□ -0.2
USF1P22415 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC13.79□□□□□ -0.2
USF1P22415 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
USF1P22415 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC13.79□□□□□ -0.2
USF1P22415 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
USF1P22415 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
USF1P22415 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
USF1P22415 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC13.78□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms