Protein–RNA interactions for Protein: P12035

KRT3, Keratin, type II cytoskeletal 3, humanhuman

Predictions only

Length 628 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT3P12035 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC17.14■□□□□ 0.33
KRT3P12035 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
KRT3P12035 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
KRT3P12035 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
KRT3P12035 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC17.14■□□□□ 0.33
KRT3P12035 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
KRT3P12035 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC17.14■□□□□ 0.33
KRT3P12035 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
KRT3P12035 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
KRT3P12035 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
KRT3P12035 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
KRT3P12035 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
KRT3P12035 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC17.14■□□□□ 0.33
KRT3P12035 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC17.14■□□□□ 0.33
KRT3P12035 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
KRT3P12035 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC17.14■□□□□ 0.33
KRT3P12035 HTR5BP-201ENST00000430851 1154 ntBASIC17.14■□□□□ 0.33
KRT3P12035 ADH5P3-201ENST00000433842 1137 ntBASIC17.14■□□□□ 0.33
KRT3P12035 MKNK2P1-201ENST00000437526 628 ntBASIC17.14■□□□□ 0.33
KRT3P12035 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC17.14■□□□□ 0.33
KRT3P12035 RN7SL589P-201ENST00000481268 310 ntBASIC17.14■□□□□ 0.33
KRT3P12035 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC17.14■□□□□ 0.33
KRT3P12035 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC17.14■□□□□ 0.33
KRT3P12035 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC17.14■□□□□ 0.33
KRT3P12035 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC17.14■□□□□ 0.33
KRT3P12035 AC026120.1-201ENST00000611536 926 ntBASIC17.14■□□□□ 0.33
KRT3P12035 AC008267.7-201ENST00000624570 1194 ntBASIC17.14■□□□□ 0.33
KRT3P12035 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC17.14■□□□□ 0.33
KRT3P12035 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
KRT3P12035 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
KRT3P12035 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
KRT3P12035 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC17.14■□□□□ 0.33
KRT3P12035 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC17.14■□□□□ 0.33
KRT3P12035 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC17.14■□□□□ 0.33
KRT3P12035 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
KRT3P12035 SUPT20HL2-201ENST00000486479 2409 ntBASIC17.13■□□□□ 0.33
KRT3P12035 AC022188.1-201ENST00000620960 1664 ntBASIC17.13■□□□□ 0.33
KRT3P12035 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
KRT3P12035 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
KRT3P12035 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC17.13■□□□□ 0.33
KRT3P12035 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC17.13■□□□□ 0.33
KRT3P12035 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC17.13■□□□□ 0.33
KRT3P12035 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
KRT3P12035 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
KRT3P12035 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC17.13■□□□□ 0.33
KRT3P12035 AC063926.3-201ENST00000624734 5658 ntBASIC17.13■□□□□ 0.33
KRT3P12035 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
KRT3P12035 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
KRT3P12035 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
KRT3P12035 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
KRT3P12035 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC17.13■□□□□ 0.33
KRT3P12035 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
KRT3P12035 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC17.13■□□□□ 0.33
KRT3P12035 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
KRT3P12035 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC17.13■□□□□ 0.33
KRT3P12035 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
KRT3P12035 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC17.13■□□□□ 0.33
KRT3P12035 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC17.13■□□□□ 0.33
KRT3P12035 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC17.13■□□□□ 0.33
KRT3P12035 SPDYE11-202ENST00000450699 704 ntBASIC17.13■□□□□ 0.33
KRT3P12035 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
KRT3P12035 AC105233.2-201ENST00000523697 349 ntBASIC17.13■□□□□ 0.33
KRT3P12035 AF228730.5-201ENST00000530288 346 ntBASIC17.13■□□□□ 0.33
KRT3P12035 AC243562.1-201ENST00000560672 389 ntBASIC17.13■□□□□ 0.33
KRT3P12035 SPDYE9P-201ENST00000570642 692 ntBASIC17.13■□□□□ 0.33
KRT3P12035 AC027307.2-201ENST00000591252 911 ntBASIC17.13■□□□□ 0.33
KRT3P12035 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
KRT3P12035 SPDYE10P-202ENST00000612005 668 ntBASIC17.13■□□□□ 0.33
KRT3P12035 SPDYE8P-202ENST00000612377 668 ntBASIC17.13■□□□□ 0.33
KRT3P12035 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
KRT3P12035 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
KRT3P12035 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
KRT3P12035 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC17.13■□□□□ 0.33
KRT3P12035 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC17.13■□□□□ 0.33
KRT3P12035 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC17.13■□□□□ 0.33
KRT3P12035 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC17.13■□□□□ 0.33
KRT3P12035 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
KRT3P12035 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC17.13■□□□□ 0.33
KRT3P12035 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
KRT3P12035 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
KRT3P12035 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
KRT3P12035 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
KRT3P12035 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC17.12■□□□□ 0.33
KRT3P12035 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
KRT3P12035 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
KRT3P12035 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
KRT3P12035 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC17.12■□□□□ 0.33
KRT3P12035 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC17.12■□□□□ 0.33
KRT3P12035 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
KRT3P12035 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
KRT3P12035 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
KRT3P12035 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
KRT3P12035 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
KRT3P12035 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
KRT3P12035 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
KRT3P12035 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
KRT3P12035 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC17.12■□□□□ 0.33
KRT3P12035 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC17.12■□□□□ 0.33
KRT3P12035 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC17.12■□□□□ 0.33
KRT3P12035 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC17.12■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms