Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
TPM1P09493 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC18■□□□□ 0.47
TPM1P09493 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC18■□□□□ 0.47
TPM1P09493 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC18■□□□□ 0.47
TPM1P09493 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
TPM1P09493 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
TPM1P09493 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC17.99■□□□□ 0.47
TPM1P09493 SLC22A20-204ENST00000530038 1673 ntBASIC17.99■□□□□ 0.47
TPM1P09493 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
TPM1P09493 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
TPM1P09493 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
TPM1P09493 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
TPM1P09493 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
TPM1P09493 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
TPM1P09493 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
TPM1P09493 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
TPM1P09493 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
TPM1P09493 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
TPM1P09493 PTCHD3P3-201ENST00000403073 906 ntBASIC17.99■□□□□ 0.47
TPM1P09493 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC17.99■□□□□ 0.47
TPM1P09493 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
TPM1P09493 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC17.99■□□□□ 0.47
TPM1P09493 ARTN-206ENST00000472435 402 ntTSL 3 BASIC17.99■□□□□ 0.47
TPM1P09493 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC17.99■□□□□ 0.47
TPM1P09493 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC17.99■□□□□ 0.47
TPM1P09493 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
TPM1P09493 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC17.99■□□□□ 0.47
TPM1P09493 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC17.99■□□□□ 0.47
TPM1P09493 BSG-214ENST00000614867 960 ntTSL 3 BASIC17.99■□□□□ 0.47
TPM1P09493 AC004706.3-202ENST00000621574 984 ntBASIC17.99■□□□□ 0.47
TPM1P09493 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC17.99■□□□□ 0.47
TPM1P09493 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
TPM1P09493 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
TPM1P09493 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
TPM1P09493 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC17.98■□□□□ 0.47
TPM1P09493 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
TPM1P09493 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
TPM1P09493 UNC13A-202ENST00000519716 9838 ntAPPRIS P2 TSL 5 BASIC17.98■□□□□ 0.47
TPM1P09493 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC17.98■□□□□ 0.47
TPM1P09493 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
TPM1P09493 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
TPM1P09493 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
TPM1P09493 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
TPM1P09493 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
TPM1P09493 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC17.98■□□□□ 0.47
TPM1P09493 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
TPM1P09493 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
TPM1P09493 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
TPM1P09493 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC17.98■□□□□ 0.47
TPM1P09493 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
TPM1P09493 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
TPM1P09493 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
TPM1P09493 AP000550.4-202ENST00000639755 178 ntBASIC17.98■□□□□ 0.47
TPM1P09493 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
TPM1P09493 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
TPM1P09493 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
TPM1P09493 ABCA7-203ENST00000435683 6211 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
TPM1P09493 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
TPM1P09493 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
TPM1P09493 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
TPM1P09493 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
TPM1P09493 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC17.98■□□□□ 0.47
TPM1P09493 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
TPM1P09493 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
TPM1P09493 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC17.98■□□□□ 0.47
TPM1P09493 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
TPM1P09493 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
TPM1P09493 TLN1-201ENST00000314888 8823 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
TPM1P09493 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
TPM1P09493 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
TPM1P09493 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC17.97■□□□□ 0.47
TPM1P09493 SPAG9-201ENST00000262013 8273 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
TPM1P09493 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
TPM1P09493 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC17.97■□□□□ 0.47
TPM1P09493 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
TPM1P09493 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC17.97■□□□□ 0.47
TPM1P09493 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
TPM1P09493 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
TPM1P09493 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
TPM1P09493 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
TPM1P09493 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC17.97■□□□□ 0.47
TPM1P09493 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC17.97■□□□□ 0.47
TPM1P09493 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
TPM1P09493 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC17.97■□□□□ 0.47
TPM1P09493 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC17.97■□□□□ 0.47
TPM1P09493 MTDHP3-201ENST00000594186 672 ntBASIC17.97■□□□□ 0.47
TPM1P09493 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
TPM1P09493 IGHV3OR16-7-201ENST00000604106 360 ntBASIC17.97■□□□□ 0.47
TPM1P09493 NPAP1P7-201ENST00000613027 823 ntBASIC17.97■□□□□ 0.47
TPM1P09493 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC17.97■□□□□ 0.47
TPM1P09493 AL805961.1-202ENST00000641562 540 ntBASIC17.97■□□□□ 0.47
TPM1P09493 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
TPM1P09493 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
TPM1P09493 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
TPM1P09493 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
TPM1P09493 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC17.97■□□□□ 0.47
TPM1P09493 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC17.97■□□□□ 0.47
TPM1P09493 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
TPM1P09493 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
TPM1P09493 AC013268.4-201ENST00000637413 2228 ntBASIC17.96■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms