Protein–RNA interactions for Protein: P01127

PDGFB, Platelet-derived growth factor subunit B, humanhuman

Predicted RBP Predictions only

Length 241 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFBP01127 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PDGFBP01127 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
PDGFBP01127 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC16.13■□□□□ 0.17
PDGFBP01127 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PDGFBP01127 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC16.13■□□□□ 0.17
PDGFBP01127 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC16.13■□□□□ 0.17
PDGFBP01127 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC16.13■□□□□ 0.17
PDGFBP01127 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC16.13■□□□□ 0.17
PDGFBP01127 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC16.13■□□□□ 0.17
PDGFBP01127 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PDGFBP01127 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PDGFBP01127 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC16.12■□□□□ 0.17
PDGFBP01127 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PDGFBP01127 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
PDGFBP01127 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
PDGFBP01127 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
PDGFBP01127 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
PDGFBP01127 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
PDGFBP01127 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
PDGFBP01127 AC006001.1-201ENST00000325130 474 ntBASIC16.12■□□□□ 0.17
PDGFBP01127 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
PDGFBP01127 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
PDGFBP01127 PTPA-217ENST00000434095 870 ntTSL 2 BASIC16.12■□□□□ 0.17
PDGFBP01127 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC16.12■□□□□ 0.17
PDGFBP01127 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
PDGFBP01127 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC16.12■□□□□ 0.17
PDGFBP01127 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC16.12■□□□□ 0.17
PDGFBP01127 AC025279.2-201ENST00000569730 653 ntBASIC16.12■□□□□ 0.17
PDGFBP01127 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC16.12■□□□□ 0.17
PDGFBP01127 MIR3619-201ENST00000579667 83 ntBASIC16.12■□□□□ 0.17
PDGFBP01127 AC105105.3-201ENST00000585470 646 ntTSL 5 BASIC16.12■□□□□ 0.17
PDGFBP01127 GEMIN7-204ENST00000591747 576 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
PDGFBP01127 MFSD11-218ENST00000591864 446 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
PDGFBP01127 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
PDGFBP01127 AL096828.3-201ENST00000615354 462 ntBASIC16.12■□□□□ 0.17
PDGFBP01127 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
PDGFBP01127 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
PDGFBP01127 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PDGFBP01127 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PDGFBP01127 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC16.12■□□□□ 0.17
PDGFBP01127 AC135050.7-201ENST00000624508 2218 ntBASIC16.12■□□□□ 0.17
PDGFBP01127 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC16.12■□□□□ 0.17
PDGFBP01127 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
PDGFBP01127 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC16.12■□□□□ 0.17
PDGFBP01127 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PDGFBP01127 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PDGFBP01127 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC16.12■□□□□ 0.17
PDGFBP01127 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC16.12■□□□□ 0.17
PDGFBP01127 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC16.12■□□□□ 0.17
PDGFBP01127 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
PDGFBP01127 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PDGFBP01127 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
PDGFBP01127 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PDGFBP01127 REXO1L8P-201ENST00000604378 1897 ntBASIC16.12■□□□□ 0.17
PDGFBP01127 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
PDGFBP01127 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
PDGFBP01127 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC16.11■□□□□ 0.17
PDGFBP01127 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC16.11■□□□□ 0.17
PDGFBP01127 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
PDGFBP01127 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
PDGFBP01127 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PDGFBP01127 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PDGFBP01127 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
PDGFBP01127 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PDGFBP01127 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
PDGFBP01127 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PDGFBP01127 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PDGFBP01127 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
PDGFBP01127 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PDGFBP01127 TMEM256-201ENST00000302422 486 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PDGFBP01127 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC16.11■□□□□ 0.17
PDGFBP01127 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PDGFBP01127 CABP1-203ENST00000351200 770 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PDGFBP01127 CD8A-204ENST00000409781 597 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
PDGFBP01127 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC16.11■□□□□ 0.17
PDGFBP01127 AC091390.4-201ENST00000484974 491 ntTSL 3 BASIC16.11■□□□□ 0.17
PDGFBP01127 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC16.11■□□□□ 0.17
PDGFBP01127 AC008438.1-201ENST00000507521 549 ntTSL 2 BASIC16.11■□□□□ 0.17
PDGFBP01127 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PDGFBP01127 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC16.11■□□□□ 0.17
PDGFBP01127 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC16.11■□□□□ 0.17
PDGFBP01127 EEF1DP1-201ENST00000585891 896 ntBASIC16.11■□□□□ 0.17
PDGFBP01127 AL451050.2-201ENST00000606967 682 ntBASIC16.11■□□□□ 0.17
PDGFBP01127 AC138951.2-201ENST00000623455 1161 ntBASIC16.11■□□□□ 0.17
PDGFBP01127 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC16.11■□□□□ 0.17
PDGFBP01127 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC16.11■□□□□ 0.17
PDGFBP01127 BOC-212ENST00000485230 2173 ntTSL 2 BASIC16.11■□□□□ 0.17
PDGFBP01127 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
PDGFBP01127 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PDGFBP01127 RHBDF1P1-201ENST00000427504 1941 ntBASIC16.11■□□□□ 0.17
PDGFBP01127 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
PDGFBP01127 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
PDGFBP01127 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
PDGFBP01127 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
PDGFBP01127 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC16.11■□□□□ 0.17
PDGFBP01127 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
PDGFBP01127 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PDGFBP01127 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PDGFBP01127 GGT4P-201ENST00000623672 1708 ntBASIC16.11■□□□□ 0.17
PDGFBP01127 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms