Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 NKILA-202ENST00000614771 2598 ntBASIC13.66□□□□□ -0.22
ABCA1O95477 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
ABCA1O95477 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
ABCA1O95477 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
ABCA1O95477 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
ABCA1O95477 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC13.66□□□□□ -0.22
ABCA1O95477 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC13.66□□□□□ -0.22
ABCA1O95477 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
ABCA1O95477 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
ABCA1O95477 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
ABCA1O95477 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
ABCA1O95477 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC13.66□□□□□ -0.22
ABCA1O95477 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC13.66□□□□□ -0.22
ABCA1O95477 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC13.66□□□□□ -0.22
ABCA1O95477 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC13.66□□□□□ -0.22
ABCA1O95477 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC13.66□□□□□ -0.22
ABCA1O95477 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC13.66□□□□□ -0.22
ABCA1O95477 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
ABCA1O95477 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC13.66□□□□□ -0.22
ABCA1O95477 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
ABCA1O95477 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC13.66□□□□□ -0.22
ABCA1O95477 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC13.66□□□□□ -0.22
ABCA1O95477 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC13.66□□□□□ -0.22
ABCA1O95477 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
ABCA1O95477 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
ABCA1O95477 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
ABCA1O95477 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
ABCA1O95477 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
ABCA1O95477 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC13.66□□□□□ -0.22
ABCA1O95477 EGFEM1P-202ENST00000431685 1563 ntBASIC13.66□□□□□ -0.22
ABCA1O95477 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC13.66□□□□□ -0.22
ABCA1O95477 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
ABCA1O95477 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
ABCA1O95477 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC13.66□□□□□ -0.22
ABCA1O95477 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC13.66□□□□□ -0.22
ABCA1O95477 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
ABCA1O95477 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
ABCA1O95477 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
ABCA1O95477 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
ABCA1O95477 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
ABCA1O95477 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC13.65□□□□□ -0.22
ABCA1O95477 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
ABCA1O95477 RPS19-201ENST00000221975 500 ntTSL 3 BASIC13.65□□□□□ -0.22
ABCA1O95477 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
ABCA1O95477 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC13.65□□□□□ -0.22
ABCA1O95477 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
ABCA1O95477 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
ABCA1O95477 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC13.65□□□□□ -0.22
ABCA1O95477 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC13.65□□□□□ -0.22
ABCA1O95477 PRYP6-201ENST00000514804 343 ntBASIC13.65□□□□□ -0.22
ABCA1O95477 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
ABCA1O95477 KRT17P8-201ENST00000540749 863 ntBASIC13.65□□□□□ -0.22
ABCA1O95477 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
ABCA1O95477 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC13.65□□□□□ -0.22
ABCA1O95477 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC13.65□□□□□ -0.22
ABCA1O95477 WASH4P-201ENST00000564273 1246 ntBASIC13.65□□□□□ -0.22
ABCA1O95477 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC13.65□□□□□ -0.22
ABCA1O95477 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC13.65□□□□□ -0.22
ABCA1O95477 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC13.65□□□□□ -0.22
ABCA1O95477 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
ABCA1O95477 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC13.65□□□□□ -0.22
ABCA1O95477 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC13.65□□□□□ -0.22
ABCA1O95477 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC13.65□□□□□ -0.22
ABCA1O95477 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
ABCA1O95477 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
ABCA1O95477 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
ABCA1O95477 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
ABCA1O95477 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
ABCA1O95477 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
ABCA1O95477 RNF216P1-203ENST00000404404 2427 ntBASIC13.65□□□□□ -0.22
ABCA1O95477 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
ABCA1O95477 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
ABCA1O95477 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
ABCA1O95477 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
ABCA1O95477 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
ABCA1O95477 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC13.65□□□□□ -0.22
ABCA1O95477 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
ABCA1O95477 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
ABCA1O95477 BCL9L-201ENST00000334801 10005 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
ABCA1O95477 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
ABCA1O95477 SPDYE19P-201ENST00000338590 713 ntBASIC13.65□□□□□ -0.22
ABCA1O95477 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
ABCA1O95477 AC093004.1-201ENST00000508850 424 ntBASIC13.65□□□□□ -0.22
ABCA1O95477 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC13.65□□□□□ -0.22
ABCA1O95477 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC13.65□□□□□ -0.22
ABCA1O95477 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC13.65□□□□□ -0.22
ABCA1O95477 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC13.65□□□□□ -0.22
ABCA1O95477 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
ABCA1O95477 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC13.65□□□□□ -0.22
ABCA1O95477 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC13.65□□□□□ -0.23
ABCA1O95477 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
ABCA1O95477 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
ABCA1O95477 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
ABCA1O95477 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
ABCA1O95477 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
ABCA1O95477 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
ABCA1O95477 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
ABCA1O95477 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC13.64□□□□□ -0.23
ABCA1O95477 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
ABCA1O95477 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms