Protein–RNA interactions for Protein: O43868

SLC28A2, Sodium/nucleoside cotransporter 2, humanhuman

Predictions only

Length 658 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A2O43868 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SLC28A2O43868 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
SLC28A2O43868 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
SLC28A2O43868 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SLC28A2O43868 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC15.72■□□□□ 0.11
SLC28A2O43868 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SLC28A2O43868 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC15.72■□□□□ 0.11
SLC28A2O43868 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC15.72■□□□□ 0.11
SLC28A2O43868 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
SLC28A2O43868 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC15.72■□□□□ 0.11
SLC28A2O43868 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC15.72■□□□□ 0.11
SLC28A2O43868 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
SLC28A2O43868 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC15.72■□□□□ 0.11
SLC28A2O43868 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC15.72■□□□□ 0.11
SLC28A2O43868 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC15.72■□□□□ 0.11
SLC28A2O43868 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC15.72■□□□□ 0.11
SLC28A2O43868 SPDYE22P-201ENST00000582158 798 ntBASIC15.72■□□□□ 0.11
SLC28A2O43868 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC15.72■□□□□ 0.11
SLC28A2O43868 IFT20-216ENST00000588477 774 ntTSL 5 BASIC15.72■□□□□ 0.11
SLC28A2O43868 SRP9-204ENST00000619790 377 ntTSL 2 BASIC15.72■□□□□ 0.11
SLC28A2O43868 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
SLC28A2O43868 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC15.72■□□□□ 0.11
SLC28A2O43868 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
SLC28A2O43868 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
SLC28A2O43868 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC15.72■□□□□ 0.11
SLC28A2O43868 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
SLC28A2O43868 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SLC28A2O43868 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC15.72■□□□□ 0.11
SLC28A2O43868 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC15.72■□□□□ 0.11
SLC28A2O43868 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SLC28A2O43868 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC15.72■□□□□ 0.11
SLC28A2O43868 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SLC28A2O43868 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SLC28A2O43868 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SLC28A2O43868 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SLC28A2O43868 CYP2T1P-202ENST00000641596 2535 ntBASIC15.71■□□□□ 0.11
SLC28A2O43868 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC15.71■□□□□ 0.11
SLC28A2O43868 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
SLC28A2O43868 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
SLC28A2O43868 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SLC28A2O43868 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC15.71■□□□□ 0.11
SLC28A2O43868 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SLC28A2O43868 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
SLC28A2O43868 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
SLC28A2O43868 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC15.71■□□□□ 0.11
SLC28A2O43868 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
SLC28A2O43868 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
SLC28A2O43868 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SLC28A2O43868 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC15.71■□□□□ 0.11
SLC28A2O43868 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC15.71■□□□□ 0.11
SLC28A2O43868 AL513480.1-201ENST00000451731 511 ntBASIC15.71■□□□□ 0.11
SLC28A2O43868 SERBP1P5-201ENST00000510079 1181 ntBASIC15.71■□□□□ 0.11
SLC28A2O43868 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
SLC28A2O43868 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC15.71■□□□□ 0.11
SLC28A2O43868 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC15.71■□□□□ 0.11
SLC28A2O43868 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
SLC28A2O43868 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.11
SLC28A2O43868 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
SLC28A2O43868 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
SLC28A2O43868 COQ9-214ENST00000567933 882 ntTSL 3 BASIC15.71■□□□□ 0.11
SLC28A2O43868 CYB561-216ENST00000582297 897 ntTSL 3 BASIC15.71■□□□□ 0.11
SLC28A2O43868 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SLC28A2O43868 AC013467.2-201ENST00000605472 835 ntBASIC15.71■□□□□ 0.11
SLC28A2O43868 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC15.71■□□□□ 0.11
SLC28A2O43868 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
SLC28A2O43868 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SLC28A2O43868 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SLC28A2O43868 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
SLC28A2O43868 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC15.71■□□□□ 0.11
SLC28A2O43868 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SLC28A2O43868 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC15.71■□□□□ 0.11
SLC28A2O43868 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SLC28A2O43868 AC008741.2-201ENST00000612792 3115 ntBASIC15.71■□□□□ 0.11
SLC28A2O43868 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC15.71■□□□□ 0.11
SLC28A2O43868 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
SLC28A2O43868 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.1
SLC28A2O43868 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC15.71■□□□□ 0.1
SLC28A2O43868 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC15.71■□□□□ 0.1
SLC28A2O43868 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.1
SLC28A2O43868 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
SLC28A2O43868 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
SLC28A2O43868 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC15.71■□□□□ 0.1
SLC28A2O43868 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SLC28A2O43868 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SLC28A2O43868 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC15.7■□□□□ 0.1
SLC28A2O43868 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
SLC28A2O43868 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
SLC28A2O43868 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
SLC28A2O43868 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC15.7■□□□□ 0.1
SLC28A2O43868 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC15.7■□□□□ 0.1
SLC28A2O43868 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
SLC28A2O43868 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC15.7■□□□□ 0.1
SLC28A2O43868 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SLC28A2O43868 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC15.7■□□□□ 0.1
SLC28A2O43868 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC15.7■□□□□ 0.1
SLC28A2O43868 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SLC28A2O43868 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
SLC28A2O43868 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
SLC28A2O43868 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SLC28A2O43868 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms