Protein–RNA interactions for Protein: O43353

RIPK2, Receptor-interacting serine/threonine-protein kinase 2, humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RIPK2O43353 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
RIPK2O43353 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC16.55■□□□□ 0.24
RIPK2O43353 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC16.55■□□□□ 0.24
RIPK2O43353 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
RIPK2O43353 AC105250.1-201ENST00000509378 2057 ntBASIC16.55■□□□□ 0.24
RIPK2O43353 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
RIPK2O43353 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
RIPK2O43353 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC16.55■□□□□ 0.24
RIPK2O43353 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
RIPK2O43353 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
RIPK2O43353 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
RIPK2O43353 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
RIPK2O43353 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC16.55■□□□□ 0.24
RIPK2O43353 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC16.55■□□□□ 0.24
RIPK2O43353 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC16.55■□□□□ 0.24
RIPK2O43353 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
RIPK2O43353 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
RIPK2O43353 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC16.54■□□□□ 0.24
RIPK2O43353 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
RIPK2O43353 GSN-203ENST00000373808 2664 ntTSL 2 BASIC16.54■□□□□ 0.24
RIPK2O43353 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
RIPK2O43353 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
RIPK2O43353 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC16.54■□□□□ 0.24
RIPK2O43353 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
RIPK2O43353 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC16.54■□□□□ 0.24
RIPK2O43353 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
RIPK2O43353 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
RIPK2O43353 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
RIPK2O43353 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC16.54■□□□□ 0.24
RIPK2O43353 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC16.54■□□□□ 0.24
RIPK2O43353 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC16.54■□□□□ 0.24
RIPK2O43353 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
RIPK2O43353 TCAF2P1-201ENST00000291129 2421 ntBASIC16.54■□□□□ 0.24
RIPK2O43353 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
RIPK2O43353 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
RIPK2O43353 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC16.54■□□□□ 0.24
RIPK2O43353 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC16.54■□□□□ 0.24
RIPK2O43353 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
RIPK2O43353 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC16.54■□□□□ 0.24
RIPK2O43353 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
RIPK2O43353 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
RIPK2O43353 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
RIPK2O43353 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
RIPK2O43353 AC011477.6-201ENST00000604980 1927 ntBASIC16.54■□□□□ 0.24
RIPK2O43353 AC012569.1-201ENST00000591191 1524 ntBASIC16.54■□□□□ 0.24
RIPK2O43353 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
RIPK2O43353 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
RIPK2O43353 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
RIPK2O43353 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
RIPK2O43353 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
RIPK2O43353 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
RIPK2O43353 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
RIPK2O43353 PAN3-AS1-201ENST00000563843 1351 ntBASIC16.53■□□□□ 0.24
RIPK2O43353 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
RIPK2O43353 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
RIPK2O43353 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
RIPK2O43353 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC16.53■□□□□ 0.24
RIPK2O43353 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
RIPK2O43353 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
RIPK2O43353 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC16.53■□□□□ 0.24
RIPK2O43353 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC16.53■□□□□ 0.24
RIPK2O43353 ATP5G2P1-201ENST00000433580 426 ntBASIC16.53■□□□□ 0.24
RIPK2O43353 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC16.53■□□□□ 0.24
RIPK2O43353 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
RIPK2O43353 FGFR3P6-201ENST00000457012 610 ntBASIC16.53■□□□□ 0.24
RIPK2O43353 RPS15P9-201ENST00000494093 319 ntBASIC16.53■□□□□ 0.24
RIPK2O43353 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
RIPK2O43353 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
RIPK2O43353 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC16.53■□□□□ 0.24
RIPK2O43353 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
RIPK2O43353 NME3-204ENST00000563498 920 ntTSL 2 BASIC16.53■□□□□ 0.24
RIPK2O43353 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
RIPK2O43353 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC16.53■□□□□ 0.24
RIPK2O43353 GGTLC5P-201ENST00000617623 998 ntBASIC16.53■□□□□ 0.24
RIPK2O43353 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC16.53■□□□□ 0.24
RIPK2O43353 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
RIPK2O43353 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC16.53■□□□□ 0.24
RIPK2O43353 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC16.53■□□□□ 0.24
RIPK2O43353 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC16.53■□□□□ 0.24
RIPK2O43353 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC16.53■□□□□ 0.24
RIPK2O43353 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
RIPK2O43353 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
RIPK2O43353 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
RIPK2O43353 AC106881.1-201ENST00000605849 3329 ntBASIC16.53■□□□□ 0.24
RIPK2O43353 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC16.53■□□□□ 0.24
RIPK2O43353 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC16.53■□□□□ 0.24
RIPK2O43353 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
RIPK2O43353 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC16.53■□□□□ 0.24
RIPK2O43353 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
RIPK2O43353 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
RIPK2O43353 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
RIPK2O43353 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC16.52■□□□□ 0.24
RIPK2O43353 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
RIPK2O43353 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
RIPK2O43353 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
RIPK2O43353 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
RIPK2O43353 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
RIPK2O43353 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC16.52■□□□□ 0.24
RIPK2O43353 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
RIPK2O43353 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms