Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC15.85■□□□□ 0.13
HDAC3O15379 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
HDAC3O15379 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC15.85■□□□□ 0.13
HDAC3O15379 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC15.85■□□□□ 0.13
HDAC3O15379 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
HDAC3O15379 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
HDAC3O15379 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC15.85■□□□□ 0.13
HDAC3O15379 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
HDAC3O15379 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
HDAC3O15379 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC15.85■□□□□ 0.13
HDAC3O15379 KRT18P27-201ENST00000427733 1299 ntBASIC15.85■□□□□ 0.13
HDAC3O15379 DUSP5P1-201ENST00000441325 1139 ntBASIC15.85■□□□□ 0.13
HDAC3O15379 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
HDAC3O15379 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC15.85■□□□□ 0.13
HDAC3O15379 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC15.85■□□□□ 0.13
HDAC3O15379 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC15.85■□□□□ 0.13
HDAC3O15379 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC15.85■□□□□ 0.13
HDAC3O15379 RIN3-211ENST00000557762 517 ntTSL 3 BASIC15.85■□□□□ 0.13
HDAC3O15379 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC15.85■□□□□ 0.13
HDAC3O15379 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC15.85■□□□□ 0.13
HDAC3O15379 AC021087.4-201ENST00000563761 564 ntBASIC15.85■□□□□ 0.13
HDAC3O15379 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC15.85■□□□□ 0.13
HDAC3O15379 AC008667.4-201ENST00000607370 168 ntBASIC15.85■□□□□ 0.13
HDAC3O15379 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
HDAC3O15379 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC15.85■□□□□ 0.13
HDAC3O15379 AL136379.1-201ENST00000623471 2642 ntBASIC15.85■□□□□ 0.13
HDAC3O15379 LINC02228-204ENST00000642115 2962 ntBASIC15.85■□□□□ 0.13
HDAC3O15379 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
HDAC3O15379 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC15.85■□□□□ 0.13
HDAC3O15379 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC15.85■□□□□ 0.13
HDAC3O15379 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC15.85■□□□□ 0.13
HDAC3O15379 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
HDAC3O15379 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC15.85■□□□□ 0.13
HDAC3O15379 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
HDAC3O15379 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC15.85■□□□□ 0.13
HDAC3O15379 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
HDAC3O15379 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
HDAC3O15379 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
HDAC3O15379 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC15.85■□□□□ 0.13
HDAC3O15379 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC15.85■□□□□ 0.13
HDAC3O15379 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
HDAC3O15379 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
HDAC3O15379 RELA-227ENST00000615805 2236 ntTSL 5 BASIC15.84■□□□□ 0.13
HDAC3O15379 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC15.84■□□□□ 0.13
HDAC3O15379 AC087481.3-201ENST00000602886 1894 ntBASIC15.84■□□□□ 0.13
HDAC3O15379 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HDAC3O15379 AC011477.6-201ENST00000604980 1927 ntBASIC15.84■□□□□ 0.13
HDAC3O15379 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
HDAC3O15379 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
HDAC3O15379 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC15.84■□□□□ 0.13
HDAC3O15379 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HDAC3O15379 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC15.84■□□□□ 0.13
HDAC3O15379 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
HDAC3O15379 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
HDAC3O15379 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HDAC3O15379 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC15.84■□□□□ 0.13
HDAC3O15379 AC073621.1-201ENST00000392730 636 ntBASIC15.84■□□□□ 0.13
HDAC3O15379 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC15.84■□□□□ 0.13
HDAC3O15379 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC15.84■□□□□ 0.13
HDAC3O15379 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC15.84■□□□□ 0.13
HDAC3O15379 AC136632.2-201ENST00000512891 861 ntBASIC15.84■□□□□ 0.13
HDAC3O15379 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC15.84■□□□□ 0.13
HDAC3O15379 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC15.84■□□□□ 0.13
HDAC3O15379 TPM1-218ENST00000559281 851 ntTSL 5 BASIC15.84■□□□□ 0.13
HDAC3O15379 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
HDAC3O15379 PNMT-203ENST00000581428 677 ntTSL 2 BASIC15.84■□□□□ 0.13
HDAC3O15379 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC15.84■□□□□ 0.13
HDAC3O15379 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
HDAC3O15379 METTL23-204ENST00000586752 904 ntTSL 2 BASIC15.84■□□□□ 0.13
HDAC3O15379 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
HDAC3O15379 AC091076.1-201ENST00000610741 619 ntBASIC15.84■□□□□ 0.13
HDAC3O15379 AL121772.3-201ENST00000610840 674 ntBASIC15.84■□□□□ 0.13
HDAC3O15379 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC15.84■□□□□ 0.13
HDAC3O15379 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
HDAC3O15379 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HDAC3O15379 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC15.84■□□□□ 0.13
HDAC3O15379 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HDAC3O15379 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC15.84■□□□□ 0.13
HDAC3O15379 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HDAC3O15379 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
HDAC3O15379 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC15.84■□□□□ 0.13
HDAC3O15379 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC15.84■□□□□ 0.13
HDAC3O15379 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC15.84■□□□□ 0.13
HDAC3O15379 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC15.84■□□□□ 0.13
HDAC3O15379 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HDAC3O15379 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
HDAC3O15379 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
HDAC3O15379 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC15.84■□□□□ 0.13
HDAC3O15379 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC15.83■□□□□ 0.13
HDAC3O15379 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
HDAC3O15379 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
HDAC3O15379 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC15.83■□□□□ 0.13
HDAC3O15379 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
HDAC3O15379 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC15.83■□□□□ 0.13
HDAC3O15379 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC15.83■□□□□ 0.12
HDAC3O15379 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
HDAC3O15379 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
HDAC3O15379 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC15.83■□□□□ 0.12
HDAC3O15379 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
HDAC3O15379 RNU1-129P-201ENST00000384064 167 ntBASIC15.83■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms