Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SIX4Q9UIU6 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
SIX4Q9UIU6 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SIX4Q9UIU6 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC17.31■□□□□ 0.36
SIX4Q9UIU6 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC17.31■□□□□ 0.36
SIX4Q9UIU6 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
SIX4Q9UIU6 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC17.31■□□□□ 0.36
SIX4Q9UIU6 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
SIX4Q9UIU6 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC17.3■□□□□ 0.36
SIX4Q9UIU6 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SIX4Q9UIU6 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SIX4Q9UIU6 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC17.3■□□□□ 0.36
SIX4Q9UIU6 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC17.3■□□□□ 0.36
SIX4Q9UIU6 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
SIX4Q9UIU6 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SIX4Q9UIU6 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC17.3■□□□□ 0.36
SIX4Q9UIU6 BANP-204ENST00000393208 2283 ntTSL 2 BASIC17.3■□□□□ 0.36
SIX4Q9UIU6 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SIX4Q9UIU6 SYS1-203ENST00000414310 795 ntTSL 3 BASIC17.3■□□□□ 0.36
SIX4Q9UIU6 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SIX4Q9UIU6 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SIX4Q9UIU6 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC17.3■□□□□ 0.36
SIX4Q9UIU6 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SIX4Q9UIU6 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC17.3■□□□□ 0.36
SIX4Q9UIU6 LY6E-204ENST00000519546 971 ntTSL 2 BASIC17.3■□□□□ 0.36
SIX4Q9UIU6 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
SIX4Q9UIU6 AQP6-203ENST00000551733 849 ntTSL 3 BASIC17.3■□□□□ 0.36
SIX4Q9UIU6 AC243562.2-201ENST00000561247 970 ntBASIC17.3■□□□□ 0.36
SIX4Q9UIU6 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC17.3■□□□□ 0.36
SIX4Q9UIU6 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC17.3■□□□□ 0.36
SIX4Q9UIU6 AL844908.2-201ENST00000609461 460 ntBASIC17.3■□□□□ 0.36
SIX4Q9UIU6 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC17.3■□□□□ 0.36
SIX4Q9UIU6 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SIX4Q9UIU6 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SIX4Q9UIU6 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
SIX4Q9UIU6 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
SIX4Q9UIU6 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SIX4Q9UIU6 AP001282.1-201ENST00000531301 1499 ntBASIC17.3■□□□□ 0.36
SIX4Q9UIU6 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SIX4Q9UIU6 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SIX4Q9UIU6 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC17.29■□□□□ 0.36
SIX4Q9UIU6 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC17.29■□□□□ 0.36
SIX4Q9UIU6 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SIX4Q9UIU6 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SIX4Q9UIU6 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC17.29■□□□□ 0.36
SIX4Q9UIU6 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC17.29■□□□□ 0.36
SIX4Q9UIU6 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SIX4Q9UIU6 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SIX4Q9UIU6 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SIX4Q9UIU6 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
SIX4Q9UIU6 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC17.29■□□□□ 0.36
SIX4Q9UIU6 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
SIX4Q9UIU6 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
SIX4Q9UIU6 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC17.29■□□□□ 0.36
SIX4Q9UIU6 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
SIX4Q9UIU6 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SIX4Q9UIU6 AC241585.1-201ENST00000433527 519 ntBASIC17.29■□□□□ 0.36
SIX4Q9UIU6 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC17.29■□□□□ 0.36
SIX4Q9UIU6 AC004890.2-204ENST00000481968 304 ntBASIC17.29■□□□□ 0.36
SIX4Q9UIU6 AL512361.1-201ENST00000554200 418 ntBASIC17.29■□□□□ 0.36
SIX4Q9UIU6 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC17.29■□□□□ 0.36
SIX4Q9UIU6 INO80C-206ENST00000586489 594 ntTSL 3 BASIC17.29■□□□□ 0.36
SIX4Q9UIU6 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SIX4Q9UIU6 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
SIX4Q9UIU6 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SIX4Q9UIU6 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC17.29■□□□□ 0.36
SIX4Q9UIU6 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC17.29■□□□□ 0.36
SIX4Q9UIU6 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC17.29■□□□□ 0.36
SIX4Q9UIU6 AC069224.1-201ENST00000566372 1715 ntBASIC17.29■□□□□ 0.36
SIX4Q9UIU6 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC17.29■□□□□ 0.36
SIX4Q9UIU6 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SIX4Q9UIU6 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
SIX4Q9UIU6 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
SIX4Q9UIU6 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC17.29■□□□□ 0.36
SIX4Q9UIU6 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC17.29■□□□□ 0.36
SIX4Q9UIU6 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC17.29■□□□□ 0.36
SIX4Q9UIU6 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC17.29■□□□□ 0.36
SIX4Q9UIU6 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC17.29■□□□□ 0.36
SIX4Q9UIU6 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC17.28■□□□□ 0.36
SIX4Q9UIU6 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC17.28■□□□□ 0.36
SIX4Q9UIU6 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC17.28■□□□□ 0.36
SIX4Q9UIU6 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SIX4Q9UIU6 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC17.28■□□□□ 0.36
SIX4Q9UIU6 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC17.28■□□□□ 0.36
SIX4Q9UIU6 AL391005.1-201ENST00000623953 2435 ntBASIC17.28■□□□□ 0.36
SIX4Q9UIU6 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
SIX4Q9UIU6 ZBTB45P2-201ENST00000452245 1531 ntBASIC17.28■□□□□ 0.36
SIX4Q9UIU6 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC17.28■□□□□ 0.36
SIX4Q9UIU6 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC17.28■□□□□ 0.36
SIX4Q9UIU6 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SIX4Q9UIU6 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SIX4Q9UIU6 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SIX4Q9UIU6 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SIX4Q9UIU6 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
SIX4Q9UIU6 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SIX4Q9UIU6 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC17.28■□□□□ 0.36
SIX4Q9UIU6 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC17.28■□□□□ 0.36
SIX4Q9UIU6 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC17.28■□□□□ 0.36
SIX4Q9UIU6 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
SIX4Q9UIU6 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC17.28■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 82.3 ms