Protein–RNA interactions for Protein: Q9UI33

SCN11A, Sodium channel protein type 11 subunit alpha, humanhuman

Predictions only

Length 1,791 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN11AQ9UI33 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
SCN11AQ9UI33 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SCN11AQ9UI33 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
SCN11AQ9UI33 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SCN11AQ9UI33 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC20.52■□□□□ 0.88
SCN11AQ9UI33 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SCN11AQ9UI33 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SCN11AQ9UI33 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
SCN11AQ9UI33 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC20.52■□□□□ 0.87
SCN11AQ9UI33 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
SCN11AQ9UI33 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SCN11AQ9UI33 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
SCN11AQ9UI33 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SCN11AQ9UI33 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SCN11AQ9UI33 MGST3-203ENST00000367885 680 ntTSL 2 BASIC20.51■□□□□ 0.87
SCN11AQ9UI33 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
SCN11AQ9UI33 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SCN11AQ9UI33 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
SCN11AQ9UI33 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SCN11AQ9UI33 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
SCN11AQ9UI33 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC20.51■□□□□ 0.87
SCN11AQ9UI33 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
SCN11AQ9UI33 ACTG1P3-201ENST00000431775 1114 ntBASIC20.51■□□□□ 0.87
SCN11AQ9UI33 AL355864.2-201ENST00000447420 863 ntBASIC20.51■□□□□ 0.87
SCN11AQ9UI33 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SCN11AQ9UI33 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC20.51■□□□□ 0.87
SCN11AQ9UI33 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC20.51■□□□□ 0.87
SCN11AQ9UI33 AC092658.1-201ENST00000505836 891 ntBASIC20.51■□□□□ 0.87
SCN11AQ9UI33 KRT90P-201ENST00000549264 1064 ntBASIC20.51■□□□□ 0.87
SCN11AQ9UI33 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC20.51■□□□□ 0.87
SCN11AQ9UI33 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC20.51■□□□□ 0.87
SCN11AQ9UI33 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC20.51■□□□□ 0.87
SCN11AQ9UI33 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC20.51■□□□□ 0.87
SCN11AQ9UI33 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SCN11AQ9UI33 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC20.51■□□□□ 0.87
SCN11AQ9UI33 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC20.51■□□□□ 0.87
SCN11AQ9UI33 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
SCN11AQ9UI33 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
SCN11AQ9UI33 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SCN11AQ9UI33 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC20.51■□□□□ 0.87
SCN11AQ9UI33 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC20.51■□□□□ 0.87
SCN11AQ9UI33 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SCN11AQ9UI33 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC20.51■□□□□ 0.87
SCN11AQ9UI33 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC20.51■□□□□ 0.87
SCN11AQ9UI33 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SCN11AQ9UI33 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SCN11AQ9UI33 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC20.51■□□□□ 0.87
SCN11AQ9UI33 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC20.51■□□□□ 0.87
SCN11AQ9UI33 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC20.51■□□□□ 0.87
SCN11AQ9UI33 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC20.51■□□□□ 0.87
SCN11AQ9UI33 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SCN11AQ9UI33 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SCN11AQ9UI33 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC20.51■□□□□ 0.87
SCN11AQ9UI33 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SCN11AQ9UI33 REXO1L6P-201ENST00000603433 1515 ntBASIC20.5■□□□□ 0.87
SCN11AQ9UI33 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC20.5■□□□□ 0.87
SCN11AQ9UI33 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SCN11AQ9UI33 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SCN11AQ9UI33 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SCN11AQ9UI33 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
SCN11AQ9UI33 RPL7P3-201ENST00000441388 714 ntBASIC20.5■□□□□ 0.87
SCN11AQ9UI33 AC022137.2-201ENST00000503482 481 ntBASIC20.5■□□□□ 0.87
SCN11AQ9UI33 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC20.5■□□□□ 0.87
SCN11AQ9UI33 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC20.5■□□□□ 0.87
SCN11AQ9UI33 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC20.5■□□□□ 0.87
SCN11AQ9UI33 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SCN11AQ9UI33 TECR-220ENST00000600083 1204 ntTSL 2 BASIC20.5■□□□□ 0.87
SCN11AQ9UI33 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SCN11AQ9UI33 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SCN11AQ9UI33 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
SCN11AQ9UI33 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SCN11AQ9UI33 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC20.5■□□□□ 0.87
SCN11AQ9UI33 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SCN11AQ9UI33 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
SCN11AQ9UI33 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SCN11AQ9UI33 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
SCN11AQ9UI33 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
SCN11AQ9UI33 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SCN11AQ9UI33 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SCN11AQ9UI33 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SCN11AQ9UI33 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC20.49■□□□□ 0.87
SCN11AQ9UI33 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SCN11AQ9UI33 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
SCN11AQ9UI33 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
SCN11AQ9UI33 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SCN11AQ9UI33 KRT43P-201ENST00000434019 910 ntBASIC20.49■□□□□ 0.87
SCN11AQ9UI33 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SCN11AQ9UI33 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC20.49■□□□□ 0.87
SCN11AQ9UI33 SLC25A47P1-201ENST00000531577 414 ntBASIC20.49■□□□□ 0.87
SCN11AQ9UI33 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC20.49■□□□□ 0.87
SCN11AQ9UI33 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
SCN11AQ9UI33 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC20.49■□□□□ 0.87
SCN11AQ9UI33 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SCN11AQ9UI33 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC20.49■□□□□ 0.87
SCN11AQ9UI33 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
SCN11AQ9UI33 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
SCN11AQ9UI33 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SCN11AQ9UI33 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
SCN11AQ9UI33 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SCN11AQ9UI33 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms