Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LHX3Q9UBR4 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC16.32■□□□□ 0.2
LHX3Q9UBR4 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC16.32■□□□□ 0.2
LHX3Q9UBR4 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC16.32■□□□□ 0.2
LHX3Q9UBR4 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC16.32■□□□□ 0.2
LHX3Q9UBR4 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC16.32■□□□□ 0.2
LHX3Q9UBR4 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC16.31■□□□□ 0.2
LHX3Q9UBR4 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
LHX3Q9UBR4 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
LHX3Q9UBR4 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC16.31■□□□□ 0.2
LHX3Q9UBR4 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC16.31■□□□□ 0.2
LHX3Q9UBR4 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LHX3Q9UBR4 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
LHX3Q9UBR4 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC16.31■□□□□ 0.2
LHX3Q9UBR4 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC16.31■□□□□ 0.2
LHX3Q9UBR4 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
LHX3Q9UBR4 BNIP3P1-202ENST00000550043 1585 ntBASIC16.31■□□□□ 0.2
LHX3Q9UBR4 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LHX3Q9UBR4 AP001282.1-201ENST00000531301 1499 ntBASIC16.31■□□□□ 0.2
LHX3Q9UBR4 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC16.31■□□□□ 0.2
LHX3Q9UBR4 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LHX3Q9UBR4 AC100757.3-201ENST00000622361 1406 ntBASIC16.31■□□□□ 0.2
LHX3Q9UBR4 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LHX3Q9UBR4 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
LHX3Q9UBR4 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC16.31■□□□□ 0.2
LHX3Q9UBR4 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LHX3Q9UBR4 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LHX3Q9UBR4 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
LHX3Q9UBR4 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LHX3Q9UBR4 VMA21-202ENST00000370361 693 ntTSL 5 BASIC16.31■□□□□ 0.2
LHX3Q9UBR4 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
LHX3Q9UBR4 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
LHX3Q9UBR4 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC16.31■□□□□ 0.2
LHX3Q9UBR4 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
LHX3Q9UBR4 HMGN1P19-201ENST00000436976 333 ntBASIC16.31■□□□□ 0.2
LHX3Q9UBR4 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC16.31■□□□□ 0.2
LHX3Q9UBR4 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC16.31■□□□□ 0.2
LHX3Q9UBR4 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC16.31■□□□□ 0.2
LHX3Q9UBR4 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
LHX3Q9UBR4 AC093214.1-201ENST00000511688 1107 ntBASIC16.31■□□□□ 0.2
LHX3Q9UBR4 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LHX3Q9UBR4 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC16.31■□□□□ 0.2
LHX3Q9UBR4 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
LHX3Q9UBR4 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
LHX3Q9UBR4 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LHX3Q9UBR4 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LHX3Q9UBR4 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
LHX3Q9UBR4 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC16.31■□□□□ 0.2
LHX3Q9UBR4 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC16.31■□□□□ 0.2
LHX3Q9UBR4 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC16.31■□□□□ 0.2
LHX3Q9UBR4 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
LHX3Q9UBR4 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
LHX3Q9UBR4 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC16.3■□□□□ 0.2
LHX3Q9UBR4 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC16.3■□□□□ 0.2
LHX3Q9UBR4 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC16.3■□□□□ 0.2
LHX3Q9UBR4 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LHX3Q9UBR4 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
LHX3Q9UBR4 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
LHX3Q9UBR4 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
LHX3Q9UBR4 KRT8P12-202ENST00000472924 1397 ntBASIC16.3■□□□□ 0.2
LHX3Q9UBR4 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
LHX3Q9UBR4 BLK-205ENST00000529894 2017 ntTSL 5 BASIC16.3■□□□□ 0.2
LHX3Q9UBR4 AC134407.2-201ENST00000625089 1978 ntBASIC16.3■□□□□ 0.2
LHX3Q9UBR4 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
LHX3Q9UBR4 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
LHX3Q9UBR4 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
LHX3Q9UBR4 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LHX3Q9UBR4 AC004987.2-201ENST00000395959 1148 ntBASIC16.3■□□□□ 0.2
LHX3Q9UBR4 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC16.3■□□□□ 0.2
LHX3Q9UBR4 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC16.3■□□□□ 0.2
LHX3Q9UBR4 TSSK5P-201ENST00000423978 907 ntBASIC16.3■□□□□ 0.2
LHX3Q9UBR4 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
LHX3Q9UBR4 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC16.3■□□□□ 0.2
LHX3Q9UBR4 EEF1DP4-201ENST00000446006 880 ntBASIC16.3■□□□□ 0.2
LHX3Q9UBR4 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC16.3■□□□□ 0.2
LHX3Q9UBR4 LY6E-204ENST00000519546 971 ntTSL 2 BASIC16.3■□□□□ 0.2
LHX3Q9UBR4 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC16.3■□□□□ 0.2
LHX3Q9UBR4 PRR29-209ENST00000582540 967 ntTSL 2 BASIC16.3■□□□□ 0.2
LHX3Q9UBR4 AL590560.3-201ENST00000623350 461 ntBASIC16.3■□□□□ 0.2
LHX3Q9UBR4 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC16.3■□□□□ 0.2
LHX3Q9UBR4 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC16.3■□□□□ 0.2
LHX3Q9UBR4 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
LHX3Q9UBR4 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LHX3Q9UBR4 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC16.3■□□□□ 0.2
LHX3Q9UBR4 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC16.3■□□□□ 0.2
LHX3Q9UBR4 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LHX3Q9UBR4 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LHX3Q9UBR4 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
LHX3Q9UBR4 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
LHX3Q9UBR4 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
LHX3Q9UBR4 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC16.3■□□□□ 0.2
LHX3Q9UBR4 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC16.3■□□□□ 0.2
LHX3Q9UBR4 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
LHX3Q9UBR4 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC16.3■□□□□ 0.2
LHX3Q9UBR4 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LHX3Q9UBR4 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LHX3Q9UBR4 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC16.29■□□□□ 0.2
LHX3Q9UBR4 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
LHX3Q9UBR4 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC16.29■□□□□ 0.2
LHX3Q9UBR4 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 59.8 ms