Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CHMP1AQ9HD42 TERT-201ENST00000310581 4018 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
CHMP1AQ9HD42 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
CHMP1AQ9HD42 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
CHMP1AQ9HD42 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CHMP1AQ9HD42 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CHMP1AQ9HD42 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CHMP1AQ9HD42 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CHMP1AQ9HD42 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC14.1□□□□□ -0.15
CHMP1AQ9HD42 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
CHMP1AQ9HD42 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC14.1□□□□□ -0.15
CHMP1AQ9HD42 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC14.1□□□□□ -0.15
CHMP1AQ9HD42 TOP3BP1-201ENST00000420768 1380 ntBASIC14.1□□□□□ -0.15
CHMP1AQ9HD42 HLA-DQB2-231ENST00000435145 2026 ntBASIC14.1□□□□□ -0.15
CHMP1AQ9HD42 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CHMP1AQ9HD42 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC14.1□□□□□ -0.15
CHMP1AQ9HD42 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CHMP1AQ9HD42 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC14.1□□□□□ -0.15
CHMP1AQ9HD42 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CHMP1AQ9HD42 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
CHMP1AQ9HD42 MAPKBP1-215ENST00000514566 5394 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CHMP1AQ9HD42 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC14.1□□□□□ -0.15
CHMP1AQ9HD42 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CHMP1AQ9HD42 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CHMP1AQ9HD42 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CHMP1AQ9HD42 ABR-205ENST00000544583 5595 ntTSL 2 BASIC14.1□□□□□ -0.15
CHMP1AQ9HD42 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CHMP1AQ9HD42 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CHMP1AQ9HD42 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CHMP1AQ9HD42 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
CHMP1AQ9HD42 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC14.1□□□□□ -0.15
CHMP1AQ9HD42 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CHMP1AQ9HD42 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
CHMP1AQ9HD42 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CHMP1AQ9HD42 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CHMP1AQ9HD42 FAM210CP-201ENST00000445714 574 ntBASIC14.1□□□□□ -0.15
CHMP1AQ9HD42 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
CHMP1AQ9HD42 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC14.1□□□□□ -0.15
CHMP1AQ9HD42 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC14.1□□□□□ -0.15
CHMP1AQ9HD42 AL358472.4-201ENST00000633140 710 ntBASIC14.1□□□□□ -0.15
CHMP1AQ9HD42 SLC35C2-213ENST00000543605 5740 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CHMP1AQ9HD42 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CHMP1AQ9HD42 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
CHMP1AQ9HD42 SLC4A7-212ENST00000446700 4000 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CHMP1AQ9HD42 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CHMP1AQ9HD42 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC14.1□□□□□ -0.15
CHMP1AQ9HD42 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CHMP1AQ9HD42 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CHMP1AQ9HD42 SPPL2A-201ENST00000261854 7372 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CHMP1AQ9HD42 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
CHMP1AQ9HD42 STEAP2-201ENST00000287908 6873 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CHMP1AQ9HD42 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CHMP1AQ9HD42 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CHMP1AQ9HD42 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CHMP1AQ9HD42 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
CHMP1AQ9HD42 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
CHMP1AQ9HD42 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CHMP1AQ9HD42 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC14.09□□□□□ -0.15
CHMP1AQ9HD42 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC14.09□□□□□ -0.15
CHMP1AQ9HD42 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC14.09□□□□□ -0.15
CHMP1AQ9HD42 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC14.09□□□□□ -0.15
CHMP1AQ9HD42 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CHMP1AQ9HD42 RALGAPA1-201ENST00000307138 7911 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CHMP1AQ9HD42 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CHMP1AQ9HD42 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC14.09□□□□□ -0.15
CHMP1AQ9HD42 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CHMP1AQ9HD42 EIF4G3-204ENST00000374935 5567 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
CHMP1AQ9HD42 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC14.09□□□□□ -0.15
CHMP1AQ9HD42 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC14.09□□□□□ -0.15
CHMP1AQ9HD42 KIAA0319-201ENST00000378214 6802 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
CHMP1AQ9HD42 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC14.09□□□□□ -0.15
CHMP1AQ9HD42 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
CHMP1AQ9HD42 ROCK1-201ENST00000399799 9484 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CHMP1AQ9HD42 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC14.09□□□□□ -0.15
CHMP1AQ9HD42 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC14.09□□□□□ -0.15
CHMP1AQ9HD42 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC14.09□□□□□ -0.15
CHMP1AQ9HD42 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CHMP1AQ9HD42 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC14.09□□□□□ -0.15
CHMP1AQ9HD42 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC14.09□□□□□ -0.15
CHMP1AQ9HD42 AC091076.1-201ENST00000610741 619 ntBASIC14.09□□□□□ -0.15
CHMP1AQ9HD42 NPAP1P7-201ENST00000613027 823 ntBASIC14.09□□□□□ -0.15
CHMP1AQ9HD42 AL139288.1-201ENST00000623748 933 ntBASIC14.09□□□□□ -0.15
CHMP1AQ9HD42 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC14.09□□□□□ -0.15
CHMP1AQ9HD42 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CHMP1AQ9HD42 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
CHMP1AQ9HD42 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CHMP1AQ9HD42 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CHMP1AQ9HD42 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CHMP1AQ9HD42 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC14.09□□□□□ -0.15
CHMP1AQ9HD42 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CHMP1AQ9HD42 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC14.09□□□□□ -0.15
CHMP1AQ9HD42 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC14.09□□□□□ -0.15
CHMP1AQ9HD42 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC14.09□□□□□ -0.15
CHMP1AQ9HD42 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CHMP1AQ9HD42 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CHMP1AQ9HD42 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CHMP1AQ9HD42 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC14.09□□□□□ -0.15
CHMP1AQ9HD42 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
CHMP1AQ9HD42 PDE4D-203ENST00000340635 8232 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
CHMP1AQ9HD42 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 43.8 ms