Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC17.81■□□□□ 0.44
TRAIPQ9BWF2 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC17.81■□□□□ 0.44
TRAIPQ9BWF2 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRAIPQ9BWF2 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
TRAIPQ9BWF2 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
TRAIPQ9BWF2 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
TRAIPQ9BWF2 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC17.81■□□□□ 0.44
TRAIPQ9BWF2 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRAIPQ9BWF2 RPL37AP1-201ENST00000412502 279 ntBASIC17.81■□□□□ 0.44
TRAIPQ9BWF2 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC17.81■□□□□ 0.44
TRAIPQ9BWF2 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
TRAIPQ9BWF2 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
TRAIPQ9BWF2 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRAIPQ9BWF2 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC17.81■□□□□ 0.44
TRAIPQ9BWF2 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC17.81■□□□□ 0.44
TRAIPQ9BWF2 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC17.81■□□□□ 0.44
TRAIPQ9BWF2 AC061975.2-201ENST00000581722 295 ntBASIC17.81■□□□□ 0.44
TRAIPQ9BWF2 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
TRAIPQ9BWF2 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
TRAIPQ9BWF2 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC17.81■□□□□ 0.44
TRAIPQ9BWF2 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC17.81■□□□□ 0.44
TRAIPQ9BWF2 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRAIPQ9BWF2 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRAIPQ9BWF2 AMT-206ENST00000458307 1860 ntTSL 2 BASIC17.81■□□□□ 0.44
TRAIPQ9BWF2 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRAIPQ9BWF2 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
TRAIPQ9BWF2 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
TRAIPQ9BWF2 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC17.81■□□□□ 0.44
TRAIPQ9BWF2 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRAIPQ9BWF2 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
TRAIPQ9BWF2 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC17.81■□□□□ 0.44
TRAIPQ9BWF2 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC17.81■□□□□ 0.44
TRAIPQ9BWF2 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC17.81■□□□□ 0.44
TRAIPQ9BWF2 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRAIPQ9BWF2 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
TRAIPQ9BWF2 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRAIPQ9BWF2 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRAIPQ9BWF2 PCDH8P1-201ENST00000428983 2773 ntBASIC17.8■□□□□ 0.44
TRAIPQ9BWF2 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRAIPQ9BWF2 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRAIPQ9BWF2 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
TRAIPQ9BWF2 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRAIPQ9BWF2 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC17.8■□□□□ 0.44
TRAIPQ9BWF2 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRAIPQ9BWF2 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC17.8■□□□□ 0.44
TRAIPQ9BWF2 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC17.8■□□□□ 0.44
TRAIPQ9BWF2 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRAIPQ9BWF2 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRAIPQ9BWF2 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRAIPQ9BWF2 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
TRAIPQ9BWF2 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRAIPQ9BWF2 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC17.8■□□□□ 0.44
TRAIPQ9BWF2 HNRNPA3P1-201ENST00000401429 1139 ntBASIC17.8■□□□□ 0.44
TRAIPQ9BWF2 PNKD-204ENST00000436005 978 ntTSL 5 BASIC17.8■□□□□ 0.44
TRAIPQ9BWF2 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
TRAIPQ9BWF2 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC17.8■□□□□ 0.44
TRAIPQ9BWF2 HNRNPA3P5-201ENST00000455201 833 ntBASIC17.8■□□□□ 0.44
TRAIPQ9BWF2 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRAIPQ9BWF2 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
TRAIPQ9BWF2 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC17.8■□□□□ 0.44
TRAIPQ9BWF2 SERBP1P5-201ENST00000510079 1181 ntBASIC17.8■□□□□ 0.44
TRAIPQ9BWF2 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC17.8■□□□□ 0.44
TRAIPQ9BWF2 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC17.8■□□□□ 0.44
TRAIPQ9BWF2 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC17.8■□□□□ 0.44
TRAIPQ9BWF2 AL844908.2-201ENST00000609461 460 ntBASIC17.8■□□□□ 0.44
TRAIPQ9BWF2 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRAIPQ9BWF2 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRAIPQ9BWF2 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
TRAIPQ9BWF2 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
TRAIPQ9BWF2 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRAIPQ9BWF2 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
TRAIPQ9BWF2 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRAIPQ9BWF2 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
TRAIPQ9BWF2 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRAIPQ9BWF2 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRAIPQ9BWF2 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC17.8■□□□□ 0.44
TRAIPQ9BWF2 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRAIPQ9BWF2 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
TRAIPQ9BWF2 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC17.79■□□□□ 0.44
TRAIPQ9BWF2 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRAIPQ9BWF2 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRAIPQ9BWF2 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC17.79■□□□□ 0.44
TRAIPQ9BWF2 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC17.79■□□□□ 0.44
TRAIPQ9BWF2 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRAIPQ9BWF2 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
TRAIPQ9BWF2 AL080243.2-201ENST00000418783 582 ntBASIC17.79■□□□□ 0.44
TRAIPQ9BWF2 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC17.79■□□□□ 0.44
TRAIPQ9BWF2 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC17.79■□□□□ 0.44
TRAIPQ9BWF2 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC17.79■□□□□ 0.44
TRAIPQ9BWF2 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC17.79■□□□□ 0.44
TRAIPQ9BWF2 AL079307.3-201ENST00000556114 283 ntBASIC17.79■□□□□ 0.44
TRAIPQ9BWF2 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
TRAIPQ9BWF2 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC17.79■□□□□ 0.44
TRAIPQ9BWF2 AC009407.1-201ENST00000568958 598 ntBASIC17.79■□□□□ 0.44
TRAIPQ9BWF2 COX11-202ENST00000571584 1108 ntTSL 2 BASIC17.79■□□□□ 0.44
TRAIPQ9BWF2 AL589739.1-201ENST00000607720 493 ntBASIC17.79■□□□□ 0.44
TRAIPQ9BWF2 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TRAIPQ9BWF2 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
TRAIPQ9BWF2 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC17.79■□□□□ 0.44
TRAIPQ9BWF2 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms