Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC18.6■□□□□ 0.57
USP28Q96RU2 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
USP28Q96RU2 AL513190.1-201ENST00000621254 727 ntBASIC18.6■□□□□ 0.57
USP28Q96RU2 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC18.6■□□□□ 0.57
USP28Q96RU2 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
USP28Q96RU2 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
USP28Q96RU2 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC18.6■□□□□ 0.57
USP28Q96RU2 PPT1-215ENST00000641471 2368 ntBASIC18.6■□□□□ 0.57
USP28Q96RU2 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC18.6■□□□□ 0.57
USP28Q96RU2 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC18.6■□□□□ 0.57
USP28Q96RU2 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
USP28Q96RU2 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
USP28Q96RU2 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
USP28Q96RU2 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC18.59■□□□□ 0.57
USP28Q96RU2 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
USP28Q96RU2 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
USP28Q96RU2 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC18.59■□□□□ 0.57
USP28Q96RU2 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
USP28Q96RU2 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
USP28Q96RU2 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
USP28Q96RU2 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
USP28Q96RU2 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC18.59■□□□□ 0.57
USP28Q96RU2 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC18.59■□□□□ 0.57
USP28Q96RU2 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC18.59■□□□□ 0.57
USP28Q96RU2 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC18.59■□□□□ 0.57
USP28Q96RU2 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC18.59■□□□□ 0.57
USP28Q96RU2 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC18.59■□□□□ 0.57
USP28Q96RU2 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
USP28Q96RU2 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
USP28Q96RU2 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
USP28Q96RU2 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC18.59■□□□□ 0.57
USP28Q96RU2 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
USP28Q96RU2 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC18.59■□□□□ 0.57
USP28Q96RU2 AC092850.2-201ENST00000623821 2697 ntBASIC18.59■□□□□ 0.57
USP28Q96RU2 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
USP28Q96RU2 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
USP28Q96RU2 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
USP28Q96RU2 AMT-233ENST00000636522 1620 ntTSL 2 BASIC18.59■□□□□ 0.57
USP28Q96RU2 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
USP28Q96RU2 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC18.59■□□□□ 0.57
USP28Q96RU2 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
USP28Q96RU2 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
USP28Q96RU2 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC18.59■□□□□ 0.57
USP28Q96RU2 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
USP28Q96RU2 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
USP28Q96RU2 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC18.58■□□□□ 0.57
USP28Q96RU2 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
USP28Q96RU2 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC18.58■□□□□ 0.57
USP28Q96RU2 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
USP28Q96RU2 WASH6P-202ENST00000359512 1437 ntBASIC18.58■□□□□ 0.57
USP28Q96RU2 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
USP28Q96RU2 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.57
USP28Q96RU2 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC18.58■□□□□ 0.57
USP28Q96RU2 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
USP28Q96RU2 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
USP28Q96RU2 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
USP28Q96RU2 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
USP28Q96RU2 IL9RP2-201ENST00000423948 1312 ntBASIC18.58■□□□□ 0.57
USP28Q96RU2 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.57
USP28Q96RU2 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
USP28Q96RU2 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
USP28Q96RU2 NARF-206ENST00000457415 1668 ntTSL 5 BASIC18.58■□□□□ 0.57
USP28Q96RU2 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
USP28Q96RU2 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
USP28Q96RU2 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC18.58■□□□□ 0.56
USP28Q96RU2 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
USP28Q96RU2 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
USP28Q96RU2 AP002472.1-201ENST00000577490 586 ntBASIC18.58■□□□□ 0.56
USP28Q96RU2 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC18.58■□□□□ 0.56
USP28Q96RU2 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC18.58■□□□□ 0.56
USP28Q96RU2 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
USP28Q96RU2 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
USP28Q96RU2 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC18.58■□□□□ 0.56
USP28Q96RU2 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC18.58■□□□□ 0.56
USP28Q96RU2 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
USP28Q96RU2 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
USP28Q96RU2 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC18.58■□□□□ 0.56
USP28Q96RU2 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
USP28Q96RU2 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
USP28Q96RU2 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
USP28Q96RU2 LCK-206ENST00000373564 2137 ntTSL 5 BASIC18.58■□□□□ 0.56
USP28Q96RU2 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
USP28Q96RU2 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC18.58■□□□□ 0.56
USP28Q96RU2 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC18.57■□□□□ 0.56
USP28Q96RU2 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
USP28Q96RU2 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC18.57■□□□□ 0.56
USP28Q96RU2 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
USP28Q96RU2 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
USP28Q96RU2 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
USP28Q96RU2 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
USP28Q96RU2 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
USP28Q96RU2 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
USP28Q96RU2 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
USP28Q96RU2 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
USP28Q96RU2 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC18.57■□□□□ 0.56
USP28Q96RU2 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC18.57■□□□□ 0.56
USP28Q96RU2 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
USP28Q96RU2 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
USP28Q96RU2 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC18.57■□□□□ 0.56
USP28Q96RU2 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms