Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
PTCHD1Q96NR3 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC15.36■□□□□ 0.05
PTCHD1Q96NR3 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
PTCHD1Q96NR3 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
PTCHD1Q96NR3 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC15.36■□□□□ 0.05
PTCHD1Q96NR3 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
PTCHD1Q96NR3 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
PTCHD1Q96NR3 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC15.36■□□□□ 0.05
PTCHD1Q96NR3 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
PTCHD1Q96NR3 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
PTCHD1Q96NR3 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
PTCHD1Q96NR3 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
PTCHD1Q96NR3 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
PTCHD1Q96NR3 HLA-H-201ENST00000383620 1096 ntBASIC15.36■□□□□ 0.05
PTCHD1Q96NR3 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
PTCHD1Q96NR3 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
PTCHD1Q96NR3 AL645939.2-201ENST00000427340 991 ntBASIC15.36■□□□□ 0.05
PTCHD1Q96NR3 SPDYE14P-201ENST00000442619 822 ntBASIC15.36■□□□□ 0.05
PTCHD1Q96NR3 RNA5SP410-201ENST00000516285 106 ntBASIC15.36■□□□□ 0.05
PTCHD1Q96NR3 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC15.36■□□□□ 0.05
PTCHD1Q96NR3 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC15.36■□□□□ 0.05
PTCHD1Q96NR3 RARRES2P9-201ENST00000565168 469 ntBASIC15.36■□□□□ 0.05
PTCHD1Q96NR3 LSM12-202ENST00000585388 942 ntTSL 3 BASIC15.36■□□□□ 0.05
PTCHD1Q96NR3 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC15.36■□□□□ 0.05
PTCHD1Q96NR3 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
PTCHD1Q96NR3 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
PTCHD1Q96NR3 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
PTCHD1Q96NR3 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
PTCHD1Q96NR3 AL589702.1-201ENST00000641229 1509 ntBASIC15.36■□□□□ 0.05
PTCHD1Q96NR3 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
PTCHD1Q96NR3 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
PTCHD1Q96NR3 ME2P1-201ENST00000426028 1970 ntBASIC15.36■□□□□ 0.05
PTCHD1Q96NR3 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
PTCHD1Q96NR3 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
PTCHD1Q96NR3 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
PTCHD1Q96NR3 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC15.36■□□□□ 0.05
PTCHD1Q96NR3 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC15.36■□□□□ 0.05
PTCHD1Q96NR3 DOC2GP-204ENST00000639052 2548 ntBASIC15.36■□□□□ 0.05
PTCHD1Q96NR3 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC15.36■□□□□ 0.05
PTCHD1Q96NR3 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC15.35■□□□□ 0.05
PTCHD1Q96NR3 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC15.35■□□□□ 0.05
PTCHD1Q96NR3 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC15.35■□□□□ 0.05
PTCHD1Q96NR3 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
PTCHD1Q96NR3 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC15.35■□□□□ 0.05
PTCHD1Q96NR3 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC15.35■□□□□ 0.05
PTCHD1Q96NR3 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC15.35■□□□□ 0.05
PTCHD1Q96NR3 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC15.35■□□□□ 0.05
PTCHD1Q96NR3 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
PTCHD1Q96NR3 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
PTCHD1Q96NR3 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
PTCHD1Q96NR3 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
PTCHD1Q96NR3 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
PTCHD1Q96NR3 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
PTCHD1Q96NR3 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
PTCHD1Q96NR3 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
PTCHD1Q96NR3 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC15.35■□□□□ 0.05
PTCHD1Q96NR3 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
PTCHD1Q96NR3 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
PTCHD1Q96NR3 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
PTCHD1Q96NR3 SPDYE7P-202ENST00000420373 878 ntBASIC15.35■□□□□ 0.05
PTCHD1Q96NR3 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC15.35■□□□□ 0.05
PTCHD1Q96NR3 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC15.35■□□□□ 0.05
PTCHD1Q96NR3 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
PTCHD1Q96NR3 AL512356.2-201ENST00000546955 174 ntBASIC15.35■□□□□ 0.05
PTCHD1Q96NR3 VPS29-207ENST00000549970 818 ntTSL 3 BASIC15.35■□□□□ 0.05
PTCHD1Q96NR3 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC15.35■□□□□ 0.05
PTCHD1Q96NR3 Z92544.3-201ENST00000624747 417 ntBASIC15.35■□□□□ 0.05
PTCHD1Q96NR3 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
PTCHD1Q96NR3 AC011270.2-201ENST00000624293 2550 ntBASIC15.35■□□□□ 0.05
PTCHD1Q96NR3 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC15.35■□□□□ 0.05
PTCHD1Q96NR3 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
PTCHD1Q96NR3 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC15.35■□□□□ 0.05
PTCHD1Q96NR3 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC15.35■□□□□ 0.05
PTCHD1Q96NR3 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
PTCHD1Q96NR3 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
PTCHD1Q96NR3 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC15.35■□□□□ 0.05
PTCHD1Q96NR3 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
PTCHD1Q96NR3 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
PTCHD1Q96NR3 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
PTCHD1Q96NR3 RELA-227ENST00000615805 2236 ntTSL 5 BASIC15.35■□□□□ 0.05
PTCHD1Q96NR3 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC15.35■□□□□ 0.05
PTCHD1Q96NR3 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC15.34■□□□□ 0.05
PTCHD1Q96NR3 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PTCHD1Q96NR3 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC15.34■□□□□ 0.05
PTCHD1Q96NR3 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PTCHD1Q96NR3 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PTCHD1Q96NR3 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
PTCHD1Q96NR3 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
PTCHD1Q96NR3 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC15.34■□□□□ 0.05
PTCHD1Q96NR3 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
PTCHD1Q96NR3 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
PTCHD1Q96NR3 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC15.34■□□□□ 0.05
PTCHD1Q96NR3 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PTCHD1Q96NR3 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
PTCHD1Q96NR3 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PTCHD1Q96NR3 FAM220BP-201ENST00000377689 816 ntBASIC15.34■□□□□ 0.05
PTCHD1Q96NR3 CD81-202ENST00000381036 880 ntTSL 3 BASIC15.34■□□□□ 0.05
PTCHD1Q96NR3 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC15.34■□□□□ 0.05
PTCHD1Q96NR3 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC15.34■□□□□ 0.05
PTCHD1Q96NR3 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC15.34■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 132.8 ms