Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
LMX1AQ8TE12 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC15.78■□□□□ 0.12
LMX1AQ8TE12 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
LMX1AQ8TE12 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
LMX1AQ8TE12 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
LMX1AQ8TE12 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
LMX1AQ8TE12 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
LMX1AQ8TE12 AL136982.4-201ENST00000437689 1740 ntBASIC15.78■□□□□ 0.12
LMX1AQ8TE12 OR8S1-201ENST00000310194 1080 ntBASIC15.78■□□□□ 0.12
LMX1AQ8TE12 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
LMX1AQ8TE12 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
LMX1AQ8TE12 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC15.78■□□□□ 0.12
LMX1AQ8TE12 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
LMX1AQ8TE12 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
LMX1AQ8TE12 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC15.78■□□□□ 0.12
LMX1AQ8TE12 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
LMX1AQ8TE12 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
LMX1AQ8TE12 AP006294.1-201ENST00000415407 339 ntBASIC15.78■□□□□ 0.12
LMX1AQ8TE12 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC15.78■□□□□ 0.12
LMX1AQ8TE12 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC15.78■□□□□ 0.12
LMX1AQ8TE12 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC15.78■□□□□ 0.12
LMX1AQ8TE12 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC15.78■□□□□ 0.12
LMX1AQ8TE12 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
LMX1AQ8TE12 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC15.78■□□□□ 0.12
LMX1AQ8TE12 NAA50-208ENST00000497255 789 ntTSL 5 BASIC15.78■□□□□ 0.12
LMX1AQ8TE12 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC15.78■□□□□ 0.12
LMX1AQ8TE12 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC15.78■□□□□ 0.12
LMX1AQ8TE12 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC15.78■□□□□ 0.12
LMX1AQ8TE12 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC15.78■□□□□ 0.12
LMX1AQ8TE12 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC15.78■□□□□ 0.12
LMX1AQ8TE12 5S_rRNA.22-201ENST00000614916 106 ntBASIC15.78■□□□□ 0.12
LMX1AQ8TE12 AC007431.3-201ENST00000623221 587 ntBASIC15.78■□□□□ 0.12
LMX1AQ8TE12 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
LMX1AQ8TE12 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
LMX1AQ8TE12 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
LMX1AQ8TE12 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
LMX1AQ8TE12 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
LMX1AQ8TE12 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
LMX1AQ8TE12 CYP4F24P-201ENST00000586049 1580 ntBASIC15.78■□□□□ 0.12
LMX1AQ8TE12 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
LMX1AQ8TE12 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC15.78■□□□□ 0.12
LMX1AQ8TE12 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC15.78■□□□□ 0.12
LMX1AQ8TE12 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
LMX1AQ8TE12 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC15.78■□□□□ 0.12
LMX1AQ8TE12 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC15.78■□□□□ 0.12
LMX1AQ8TE12 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
LMX1AQ8TE12 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
LMX1AQ8TE12 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
LMX1AQ8TE12 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
LMX1AQ8TE12 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
LMX1AQ8TE12 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
LMX1AQ8TE12 SLC7A15P-201ENST00000424028 1363 ntBASIC15.77■□□□□ 0.12
LMX1AQ8TE12 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC15.77■□□□□ 0.12
LMX1AQ8TE12 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
LMX1AQ8TE12 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
LMX1AQ8TE12 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
LMX1AQ8TE12 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
LMX1AQ8TE12 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC15.77■□□□□ 0.12
LMX1AQ8TE12 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
LMX1AQ8TE12 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC15.77■□□□□ 0.12
LMX1AQ8TE12 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC15.77■□□□□ 0.12
LMX1AQ8TE12 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC15.77■□□□□ 0.12
LMX1AQ8TE12 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC15.77■□□□□ 0.12
LMX1AQ8TE12 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
LMX1AQ8TE12 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC15.77■□□□□ 0.12
LMX1AQ8TE12 RN7SL752P-201ENST00000463779 287 ntBASIC15.77■□□□□ 0.12
LMX1AQ8TE12 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC15.77■□□□□ 0.12
LMX1AQ8TE12 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC15.77■□□□□ 0.12
LMX1AQ8TE12 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
LMX1AQ8TE12 AC055876.2-201ENST00000531834 546 ntBASIC15.77■□□□□ 0.12
LMX1AQ8TE12 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
LMX1AQ8TE12 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC15.77■□□□□ 0.12
LMX1AQ8TE12 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC15.77■□□□□ 0.12
LMX1AQ8TE12 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC15.77■□□□□ 0.12
LMX1AQ8TE12 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC15.77■□□□□ 0.12
LMX1AQ8TE12 AL008721.1-201ENST00000609964 604 ntBASIC15.77■□□□□ 0.12
LMX1AQ8TE12 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC15.77■□□□□ 0.11
LMX1AQ8TE12 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.11
LMX1AQ8TE12 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
LMX1AQ8TE12 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
LMX1AQ8TE12 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
LMX1AQ8TE12 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.11
LMX1AQ8TE12 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC15.77■□□□□ 0.11
LMX1AQ8TE12 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.11
LMX1AQ8TE12 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
LMX1AQ8TE12 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.11
LMX1AQ8TE12 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.11
LMX1AQ8TE12 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
LMX1AQ8TE12 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC15.77■□□□□ 0.11
LMX1AQ8TE12 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC15.77■□□□□ 0.11
LMX1AQ8TE12 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.11
LMX1AQ8TE12 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
LMX1AQ8TE12 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
LMX1AQ8TE12 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
LMX1AQ8TE12 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
LMX1AQ8TE12 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
LMX1AQ8TE12 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
LMX1AQ8TE12 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
LMX1AQ8TE12 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
LMX1AQ8TE12 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms