Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC16.29■□□□□ 0.2
HDDC3Q8N4P3 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HDDC3Q8N4P3 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC16.29■□□□□ 0.2
HDDC3Q8N4P3 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
HDDC3Q8N4P3 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HDDC3Q8N4P3 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HDDC3Q8N4P3 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
HDDC3Q8N4P3 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC16.29■□□□□ 0.2
HDDC3Q8N4P3 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC16.29■□□□□ 0.2
HDDC3Q8N4P3 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HDDC3Q8N4P3 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
HDDC3Q8N4P3 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HDDC3Q8N4P3 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC16.29■□□□□ 0.2
HDDC3Q8N4P3 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HDDC3Q8N4P3 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HDDC3Q8N4P3 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HDDC3Q8N4P3 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
HDDC3Q8N4P3 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HDDC3Q8N4P3 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
HDDC3Q8N4P3 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
HDDC3Q8N4P3 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
HDDC3Q8N4P3 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
HDDC3Q8N4P3 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HDDC3Q8N4P3 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HDDC3Q8N4P3 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC16.28■□□□□ 0.2
HDDC3Q8N4P3 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
HDDC3Q8N4P3 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HDDC3Q8N4P3 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HDDC3Q8N4P3 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC16.28■□□□□ 0.2
HDDC3Q8N4P3 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
HDDC3Q8N4P3 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC16.28■□□□□ 0.2
HDDC3Q8N4P3 SERBP1P3-201ENST00000459980 809 ntBASIC16.28■□□□□ 0.2
HDDC3Q8N4P3 AC135586.1-201ENST00000539323 574 ntBASIC16.28■□□□□ 0.2
HDDC3Q8N4P3 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC16.28■□□□□ 0.2
HDDC3Q8N4P3 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC16.28■□□□□ 0.2
HDDC3Q8N4P3 AC004840.1-201ENST00000636359 365 ntBASIC16.28■□□□□ 0.2
HDDC3Q8N4P3 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
HDDC3Q8N4P3 IMPDH1P4-201ENST00000445028 1534 ntBASIC16.28■□□□□ 0.2
HDDC3Q8N4P3 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC16.28■□□□□ 0.2
HDDC3Q8N4P3 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HDDC3Q8N4P3 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
HDDC3Q8N4P3 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HDDC3Q8N4P3 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HDDC3Q8N4P3 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC16.28■□□□□ 0.2
HDDC3Q8N4P3 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HDDC3Q8N4P3 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HDDC3Q8N4P3 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HDDC3Q8N4P3 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
HDDC3Q8N4P3 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
HDDC3Q8N4P3 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC16.27■□□□□ 0.2
HDDC3Q8N4P3 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
HDDC3Q8N4P3 STK24-203ENST00000397517 4578 ntTSL 2 BASIC16.27■□□□□ 0.2
HDDC3Q8N4P3 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
HDDC3Q8N4P3 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
HDDC3Q8N4P3 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
HDDC3Q8N4P3 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
HDDC3Q8N4P3 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
HDDC3Q8N4P3 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
HDDC3Q8N4P3 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
HDDC3Q8N4P3 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
HDDC3Q8N4P3 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC16.27■□□□□ 0.2
HDDC3Q8N4P3 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.2
HDDC3Q8N4P3 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
HDDC3Q8N4P3 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
HDDC3Q8N4P3 API5-211ENST00000534695 560 ntTSL 5 BASIC16.27■□□□□ 0.2
HDDC3Q8N4P3 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
HDDC3Q8N4P3 AL512361.1-201ENST00000554200 418 ntBASIC16.27■□□□□ 0.2
HDDC3Q8N4P3 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
HDDC3Q8N4P3 AL365330.1-201ENST00000607459 531 ntBASIC16.27■□□□□ 0.2
HDDC3Q8N4P3 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
HDDC3Q8N4P3 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC16.27■□□□□ 0.2
HDDC3Q8N4P3 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
HDDC3Q8N4P3 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
HDDC3Q8N4P3 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC16.27■□□□□ 0.19
HDDC3Q8N4P3 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.19
HDDC3Q8N4P3 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
HDDC3Q8N4P3 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.19
HDDC3Q8N4P3 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
HDDC3Q8N4P3 KRT8P12-202ENST00000472924 1397 ntBASIC16.26■□□□□ 0.19
HDDC3Q8N4P3 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
HDDC3Q8N4P3 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC16.26■□□□□ 0.19
HDDC3Q8N4P3 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC16.26■□□□□ 0.19
HDDC3Q8N4P3 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HDDC3Q8N4P3 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HDDC3Q8N4P3 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
HDDC3Q8N4P3 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
HDDC3Q8N4P3 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
HDDC3Q8N4P3 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HDDC3Q8N4P3 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
HDDC3Q8N4P3 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
HDDC3Q8N4P3 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
HDDC3Q8N4P3 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
HDDC3Q8N4P3 AL512384.1-201ENST00000406683 331 ntBASIC16.26■□□□□ 0.19
HDDC3Q8N4P3 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC16.26■□□□□ 0.19
HDDC3Q8N4P3 INE1-201ENST00000456273 945 ntBASIC16.26■□□□□ 0.19
HDDC3Q8N4P3 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC16.26■□□□□ 0.19
HDDC3Q8N4P3 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC16.26■□□□□ 0.19
HDDC3Q8N4P3 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC16.26■□□□□ 0.19
HDDC3Q8N4P3 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC16.26■□□□□ 0.19
HDDC3Q8N4P3 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC16.26■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 62 ms