Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
USP39Q53GS9 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
USP39Q53GS9 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
USP39Q53GS9 AC073439.1-201ENST00000624121 1774 ntBASIC16.53■□□□□ 0.24
USP39Q53GS9 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC16.53■□□□□ 0.24
USP39Q53GS9 BTBD7P1-201ENST00000447253 1453 ntBASIC16.53■□□□□ 0.24
USP39Q53GS9 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC16.53■□□□□ 0.24
USP39Q53GS9 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
USP39Q53GS9 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
USP39Q53GS9 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
USP39Q53GS9 AC078925.2-201ENST00000624013 1973 ntBASIC16.53■□□□□ 0.24
USP39Q53GS9 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
USP39Q53GS9 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC16.53■□□□□ 0.24
USP39Q53GS9 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
USP39Q53GS9 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC16.53■□□□□ 0.24
USP39Q53GS9 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
USP39Q53GS9 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
USP39Q53GS9 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
USP39Q53GS9 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
USP39Q53GS9 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC16.52■□□□□ 0.24
USP39Q53GS9 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC16.52■□□□□ 0.24
USP39Q53GS9 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
USP39Q53GS9 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
USP39Q53GS9 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
USP39Q53GS9 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
USP39Q53GS9 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
USP39Q53GS9 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
USP39Q53GS9 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC16.52■□□□□ 0.24
USP39Q53GS9 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
USP39Q53GS9 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC16.52■□□□□ 0.24
USP39Q53GS9 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC16.52■□□□□ 0.24
USP39Q53GS9 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
USP39Q53GS9 RPS19-201ENST00000221975 500 ntTSL 3 BASIC16.52■□□□□ 0.24
USP39Q53GS9 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
USP39Q53GS9 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC16.52■□□□□ 0.24
USP39Q53GS9 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
USP39Q53GS9 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
USP39Q53GS9 CENPM-206ENST00000407253 818 ntTSL 2 BASIC16.52■□□□□ 0.24
USP39Q53GS9 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
USP39Q53GS9 DFFBP1-201ENST00000433250 979 ntBASIC16.52■□□□□ 0.24
USP39Q53GS9 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC16.52■□□□□ 0.24
USP39Q53GS9 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC16.52■□□□□ 0.24
USP39Q53GS9 IGHV3-71-201ENST00000523324 359 ntBASIC16.52■□□□□ 0.24
USP39Q53GS9 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC16.52■□□□□ 0.24
USP39Q53GS9 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC16.52■□□□□ 0.24
USP39Q53GS9 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC16.52■□□□□ 0.24
USP39Q53GS9 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
USP39Q53GS9 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
USP39Q53GS9 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC16.52■□□□□ 0.24
USP39Q53GS9 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC16.52■□□□□ 0.24
USP39Q53GS9 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC16.52■□□□□ 0.23
USP39Q53GS9 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC16.52■□□□□ 0.23
USP39Q53GS9 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.23
USP39Q53GS9 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC16.52■□□□□ 0.23
USP39Q53GS9 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.23
USP39Q53GS9 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
USP39Q53GS9 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.23
USP39Q53GS9 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC16.52■□□□□ 0.23
USP39Q53GS9 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
USP39Q53GS9 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
USP39Q53GS9 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC16.52■□□□□ 0.23
USP39Q53GS9 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC16.52■□□□□ 0.23
USP39Q53GS9 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
USP39Q53GS9 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.23
USP39Q53GS9 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
USP39Q53GS9 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
USP39Q53GS9 UBALD1-205ENST00000590891 2641 ntBASIC16.51■□□□□ 0.23
USP39Q53GS9 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC16.51■□□□□ 0.23
USP39Q53GS9 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC16.51■□□□□ 0.23
USP39Q53GS9 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
USP39Q53GS9 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
USP39Q53GS9 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC16.51■□□□□ 0.23
USP39Q53GS9 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC16.51■□□□□ 0.23
USP39Q53GS9 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
USP39Q53GS9 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
USP39Q53GS9 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
USP39Q53GS9 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC16.51■□□□□ 0.23
USP39Q53GS9 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
USP39Q53GS9 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC16.51■□□□□ 0.23
USP39Q53GS9 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
USP39Q53GS9 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
USP39Q53GS9 U91328.1-201ENST00000437528 223 ntBASIC16.51■□□□□ 0.23
USP39Q53GS9 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC16.51■□□□□ 0.23
USP39Q53GS9 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC16.51■□□□□ 0.23
USP39Q53GS9 GIMAP3P-201ENST00000495150 836 ntBASIC16.51■□□□□ 0.23
USP39Q53GS9 AC011495.1-201ENST00000498085 584 ntBASIC16.51■□□□□ 0.23
USP39Q53GS9 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
USP39Q53GS9 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC16.51■□□□□ 0.23
USP39Q53GS9 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
USP39Q53GS9 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC16.51■□□□□ 0.23
USP39Q53GS9 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
USP39Q53GS9 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
USP39Q53GS9 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC16.51■□□□□ 0.23
USP39Q53GS9 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
USP39Q53GS9 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
USP39Q53GS9 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
USP39Q53GS9 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
USP39Q53GS9 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC16.51■□□□□ 0.23
USP39Q53GS9 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC16.5■□□□□ 0.23
USP39Q53GS9 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC16.5■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 48.1 ms