Protein–RNA interactions for Protein: Q07699

SCN1B, Sodium channel subunit beta-1, humanhuman

Predictions only

Length 218 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1BQ07699 KCP-203ENST00000610776 5108 ntTSL 5 BASIC14.59□□□□□ -0.07
SCN1BQ07699 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
SCN1BQ07699 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
SCN1BQ07699 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
SCN1BQ07699 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.07
SCN1BQ07699 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC14.58□□□□□ -0.07
SCN1BQ07699 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.07
SCN1BQ07699 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC14.58□□□□□ -0.07
SCN1BQ07699 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC14.58□□□□□ -0.07
SCN1BQ07699 SSR4P1-203ENST00000599569 2260 ntBASIC14.58□□□□□ -0.08
SCN1BQ07699 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SCN1BQ07699 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
SCN1BQ07699 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
SCN1BQ07699 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
SCN1BQ07699 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SCN1BQ07699 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
SCN1BQ07699 AC132938.5-201ENST00000624980 1813 ntBASIC14.58□□□□□ -0.08
SCN1BQ07699 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC14.58□□□□□ -0.08
SCN1BQ07699 BET1L-202ENST00000332865 533 ntTSL 5 BASIC14.58□□□□□ -0.08
SCN1BQ07699 AC003669.1-201ENST00000334569 611 ntBASIC14.58□□□□□ -0.08
SCN1BQ07699 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
SCN1BQ07699 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC14.58□□□□□ -0.08
SCN1BQ07699 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC14.58□□□□□ -0.08
SCN1BQ07699 THAP5-204ENST00000438865 868 ntTSL 2 BASIC14.58□□□□□ -0.08
SCN1BQ07699 LINC02447-202ENST00000501888 2146 ntBASIC14.58□□□□□ -0.08
SCN1BQ07699 KRT18P35-201ENST00000510488 1269 ntBASIC14.58□□□□□ -0.08
SCN1BQ07699 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC14.58□□□□□ -0.08
SCN1BQ07699 COX5A-204ENST00000567270 579 ntTSL 3 BASIC14.58□□□□□ -0.08
SCN1BQ07699 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC14.58□□□□□ -0.08
SCN1BQ07699 AC069148.1-201ENST00000608741 768 ntBASIC14.58□□□□□ -0.08
SCN1BQ07699 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC14.58□□□□□ -0.08
SCN1BQ07699 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SCN1BQ07699 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SCN1BQ07699 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC14.58□□□□□ -0.08
SCN1BQ07699 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC14.58□□□□□ -0.08
SCN1BQ07699 AC106881.1-201ENST00000605849 3329 ntBASIC14.58□□□□□ -0.08
SCN1BQ07699 CNDP2-201ENST00000324262 5130 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SCN1BQ07699 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SCN1BQ07699 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC14.58□□□□□ -0.08
SCN1BQ07699 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC14.58□□□□□ -0.08
SCN1BQ07699 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SCN1BQ07699 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SCN1BQ07699 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SCN1BQ07699 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
SCN1BQ07699 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
SCN1BQ07699 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
SCN1BQ07699 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SCN1BQ07699 FGD5-206ENST00000543601 5768 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
SCN1BQ07699 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC14.58□□□□□ -0.08
SCN1BQ07699 CDC14C-201ENST00000428251 1719 ntBASIC14.58□□□□□ -0.08
SCN1BQ07699 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SCN1BQ07699 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SCN1BQ07699 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC14.58□□□□□ -0.08
SCN1BQ07699 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC14.58□□□□□ -0.08
SCN1BQ07699 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC14.58□□□□□ -0.08
SCN1BQ07699 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC14.57□□□□□ -0.08
SCN1BQ07699 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
SCN1BQ07699 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC14.57□□□□□ -0.08
SCN1BQ07699 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
SCN1BQ07699 CICP24-201ENST00000605464 2705 ntBASIC14.57□□□□□ -0.08
SCN1BQ07699 BANP-203ENST00000393207 2438 ntTSL 2 BASIC14.57□□□□□ -0.08
SCN1BQ07699 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
SCN1BQ07699 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SCN1BQ07699 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
SCN1BQ07699 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
SCN1BQ07699 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
SCN1BQ07699 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SCN1BQ07699 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
SCN1BQ07699 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC14.57□□□□□ -0.08
SCN1BQ07699 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC14.57□□□□□ -0.08
SCN1BQ07699 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SCN1BQ07699 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
SCN1BQ07699 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SCN1BQ07699 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC14.57□□□□□ -0.08
SCN1BQ07699 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
SCN1BQ07699 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC14.57□□□□□ -0.08
SCN1BQ07699 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC14.57□□□□□ -0.08
SCN1BQ07699 LINC00895-201ENST00000629028 1637 ntBASIC14.57□□□□□ -0.08
SCN1BQ07699 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SCN1BQ07699 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC14.57□□□□□ -0.08
SCN1BQ07699 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
SCN1BQ07699 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC14.57□□□□□ -0.08
SCN1BQ07699 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SCN1BQ07699 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC14.57□□□□□ -0.08
SCN1BQ07699 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC14.57□□□□□ -0.08
SCN1BQ07699 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
SCN1BQ07699 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC14.57□□□□□ -0.08
SCN1BQ07699 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
SCN1BQ07699 AC099336.1-202ENST00000602961 463 ntBASIC14.57□□□□□ -0.08
SCN1BQ07699 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
SCN1BQ07699 AC092119.3-201ENST00000612618 583 ntBASIC14.57□□□□□ -0.08
SCN1BQ07699 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
SCN1BQ07699 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC14.57□□□□□ -0.08
SCN1BQ07699 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC14.57□□□□□ -0.08
SCN1BQ07699 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC14.57□□□□□ -0.08
SCN1BQ07699 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC14.57□□□□□ -0.08
SCN1BQ07699 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SCN1BQ07699 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
SCN1BQ07699 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
SCN1BQ07699 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 82.1 ms