Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LIG3P49916 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
LIG3P49916 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
LIG3P49916 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LIG3P49916 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
LIG3P49916 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LIG3P49916 METTL26-205ENST00000397666 726 ntTSL 2 BASIC17.21■□□□□ 0.35
LIG3P49916 NABP1-203ENST00000409510 843 ntTSL 5 BASIC17.21■□□□□ 0.35
LIG3P49916 CRCP-205ENST00000431089 942 ntTSL 2 BASIC17.21■□□□□ 0.35
LIG3P49916 AL591424.1-201ENST00000442569 1213 ntBASIC17.21■□□□□ 0.35
LIG3P49916 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC17.21■□□□□ 0.35
LIG3P49916 CALM1-205ENST00000553542 877 ntTSL 5 BASIC17.21■□□□□ 0.35
LIG3P49916 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC17.21■□□□□ 0.35
LIG3P49916 AC004790.2-201ENST00000623588 572 ntBASIC17.21■□□□□ 0.35
LIG3P49916 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC17.21■□□□□ 0.35
LIG3P49916 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC17.21■□□□□ 0.35
LIG3P49916 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LIG3P49916 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC17.21■□□□□ 0.35
LIG3P49916 PI4KAP1-204ENST00000612579 1703 ntBASIC17.21■□□□□ 0.35
LIG3P49916 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
LIG3P49916 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
LIG3P49916 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
LIG3P49916 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.34
LIG3P49916 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
LIG3P49916 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC17.21■□□□□ 0.34
LIG3P49916 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC17.21■□□□□ 0.34
LIG3P49916 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC17.2■□□□□ 0.34
LIG3P49916 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LIG3P49916 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
LIG3P49916 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
LIG3P49916 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC17.2■□□□□ 0.34
LIG3P49916 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
LIG3P49916 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC17.2■□□□□ 0.34
LIG3P49916 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
LIG3P49916 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC17.2■□□□□ 0.34
LIG3P49916 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LIG3P49916 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
LIG3P49916 AC006058.4-201ENST00000624016 1670 ntBASIC17.2■□□□□ 0.34
LIG3P49916 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC17.2■□□□□ 0.34
LIG3P49916 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
LIG3P49916 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
LIG3P49916 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LIG3P49916 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
LIG3P49916 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC17.2■□□□□ 0.34
LIG3P49916 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC17.2■□□□□ 0.34
LIG3P49916 HS6ST1P1-201ENST00000481504 1234 ntBASIC17.2■□□□□ 0.34
LIG3P49916 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC17.2■□□□□ 0.34
LIG3P49916 MIR4751-201ENST00000578027 74 ntBASIC17.2■□□□□ 0.34
LIG3P49916 TCAP-202ENST00000578283 583 ntTSL 5 BASIC17.2■□□□□ 0.34
LIG3P49916 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LIG3P49916 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC17.2■□□□□ 0.34
LIG3P49916 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC17.2■□□□□ 0.34
LIG3P49916 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LIG3P49916 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC17.2■□□□□ 0.34
LIG3P49916 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
LIG3P49916 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LIG3P49916 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
LIG3P49916 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
LIG3P49916 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LIG3P49916 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
LIG3P49916 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC17.2■□□□□ 0.34
LIG3P49916 PMS2P7-201ENST00000506558 1336 ntBASIC17.2■□□□□ 0.34
LIG3P49916 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LIG3P49916 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LIG3P49916 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
LIG3P49916 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
LIG3P49916 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
LIG3P49916 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
LIG3P49916 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC17.19■□□□□ 0.34
LIG3P49916 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
LIG3P49916 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
LIG3P49916 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC17.19■□□□□ 0.34
LIG3P49916 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
LIG3P49916 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
LIG3P49916 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC17.19■□□□□ 0.34
LIG3P49916 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
LIG3P49916 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
LIG3P49916 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
LIG3P49916 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC17.19■□□□□ 0.34
LIG3P49916 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC17.19■□□□□ 0.34
LIG3P49916 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
LIG3P49916 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
LIG3P49916 FABP5-202ENST00000396359 986 ntTSL 5 BASIC17.19■□□□□ 0.34
LIG3P49916 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
LIG3P49916 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC17.19■□□□□ 0.34
LIG3P49916 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC17.19■□□□□ 0.34
LIG3P49916 KRT18P3-201ENST00000451602 1288 ntBASIC17.19■□□□□ 0.34
LIG3P49916 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC17.19■□□□□ 0.34
LIG3P49916 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC17.19■□□□□ 0.34
LIG3P49916 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC17.19■□□□□ 0.34
LIG3P49916 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC17.19■□□□□ 0.34
LIG3P49916 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC17.19■□□□□ 0.34
LIG3P49916 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC17.19■□□□□ 0.34
LIG3P49916 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
LIG3P49916 GGTLC5P-201ENST00000617623 998 ntBASIC17.19■□□□□ 0.34
LIG3P49916 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC17.19■□□□□ 0.34
LIG3P49916 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
LIG3P49916 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
LIG3P49916 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC17.19■□□□□ 0.34
LIG3P49916 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms