Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC13.38□□□□□ -0.27
CDX1P47902 MIR940-201ENST00000401276 94 ntBASIC13.38□□□□□ -0.27
CDX1P47902 PTCHD3P3-201ENST00000403073 906 ntBASIC13.38□□□□□ -0.27
CDX1P47902 ATP6V0CP3-201ENST00000417255 467 ntBASIC13.38□□□□□ -0.27
CDX1P47902 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC13.38□□□□□ -0.27
CDX1P47902 CRCP-205ENST00000431089 942 ntTSL 2 BASIC13.38□□□□□ -0.27
CDX1P47902 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC13.38□□□□□ -0.27
CDX1P47902 POLD2P1-201ENST00000511220 997 ntBASIC13.38□□□□□ -0.27
CDX1P47902 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC13.38□□□□□ -0.27
CDX1P47902 RNA5SP416-201ENST00000516838 111 ntBASIC13.38□□□□□ -0.27
CDX1P47902 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC13.38□□□□□ -0.27
CDX1P47902 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC13.38□□□□□ -0.27
CDX1P47902 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC13.38□□□□□ -0.27
CDX1P47902 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC13.38□□□□□ -0.27
CDX1P47902 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC13.38□□□□□ -0.27
CDX1P47902 AC140113.2-201ENST00000604370 208 ntBASIC13.38□□□□□ -0.27
CDX1P47902 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
CDX1P47902 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC13.38□□□□□ -0.27
CDX1P47902 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC13.38□□□□□ -0.27
CDX1P47902 GPN1-201ENST00000264718 2496 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
CDX1P47902 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC13.38□□□□□ -0.27
CDX1P47902 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC13.38□□□□□ -0.27
CDX1P47902 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
CDX1P47902 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
CDX1P47902 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
CDX1P47902 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CDX1P47902 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC13.38□□□□□ -0.27
CDX1P47902 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
CDX1P47902 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CDX1P47902 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC13.38□□□□□ -0.27
CDX1P47902 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
CDX1P47902 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC13.38□□□□□ -0.27
CDX1P47902 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC13.37□□□□□ -0.27
CDX1P47902 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
CDX1P47902 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CDX1P47902 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
CDX1P47902 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CDX1P47902 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC13.37□□□□□ -0.27
CDX1P47902 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
CDX1P47902 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CDX1P47902 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC13.37□□□□□ -0.27
CDX1P47902 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC13.37□□□□□ -0.27
CDX1P47902 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
CDX1P47902 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CDX1P47902 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CDX1P47902 RNF216P1-203ENST00000404404 2427 ntBASIC13.37□□□□□ -0.27
CDX1P47902 BEX3-201ENST00000361298 921 ntTSL 2 BASIC13.37□□□□□ -0.27
CDX1P47902 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CDX1P47902 FABP5-202ENST00000396359 986 ntTSL 5 BASIC13.37□□□□□ -0.27
CDX1P47902 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CDX1P47902 NABP1-203ENST00000409510 843 ntTSL 5 BASIC13.37□□□□□ -0.27
CDX1P47902 CRYGEP-201ENST00000412192 528 ntBASIC13.37□□□□□ -0.27
CDX1P47902 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC13.37□□□□□ -0.27
CDX1P47902 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC13.37□□□□□ -0.27
CDX1P47902 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC13.37□□□□□ -0.27
CDX1P47902 PRSS29P-201ENST00000440800 595 ntBASIC13.37□□□□□ -0.27
CDX1P47902 KRT18P3-201ENST00000451602 1288 ntBASIC13.37□□□□□ -0.27
CDX1P47902 HS6ST1P1-201ENST00000481504 1234 ntBASIC13.37□□□□□ -0.27
CDX1P47902 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC13.37□□□□□ -0.27
CDX1P47902 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC13.37□□□□□ -0.27
CDX1P47902 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CDX1P47902 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC13.37□□□□□ -0.27
CDX1P47902 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC13.37□□□□□ -0.27
CDX1P47902 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
CDX1P47902 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
CDX1P47902 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
CDX1P47902 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CDX1P47902 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC13.37□□□□□ -0.27
CDX1P47902 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
CDX1P47902 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CDX1P47902 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC13.37□□□□□ -0.27
CDX1P47902 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC13.37□□□□□ -0.27
CDX1P47902 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CDX1P47902 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC13.37□□□□□ -0.27
CDX1P47902 AC116353.5-201ENST00000638148 1699 ntBASIC13.37□□□□□ -0.27
CDX1P47902 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC13.37□□□□□ -0.27
CDX1P47902 AL590787.1-201ENST00000568856 1315 ntBASIC13.37□□□□□ -0.27
CDX1P47902 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CDX1P47902 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CDX1P47902 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CDX1P47902 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CDX1P47902 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC13.36□□□□□ -0.27
CDX1P47902 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
CDX1P47902 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC13.36□□□□□ -0.27
CDX1P47902 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
CDX1P47902 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CDX1P47902 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
CDX1P47902 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC13.36□□□□□ -0.27
CDX1P47902 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
CDX1P47902 AC078925.2-201ENST00000624013 1973 ntBASIC13.36□□□□□ -0.27
CDX1P47902 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
CDX1P47902 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
CDX1P47902 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC13.36□□□□□ -0.27
CDX1P47902 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
CDX1P47902 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
CDX1P47902 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CDX1P47902 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
CDX1P47902 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
CDX1P47902 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
CDX1P47902 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms