Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
COL18A1P39060 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
COL18A1P39060 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
COL18A1P39060 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
COL18A1P39060 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC21■□□□□ 0.95
COL18A1P39060 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC21■□□□□ 0.95
COL18A1P39060 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC21■□□□□ 0.95
COL18A1P39060 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC21■□□□□ 0.95
COL18A1P39060 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
COL18A1P39060 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC21■□□□□ 0.95
COL18A1P39060 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
COL18A1P39060 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC20.99■□□□□ 0.95
COL18A1P39060 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
COL18A1P39060 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
COL18A1P39060 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
COL18A1P39060 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
COL18A1P39060 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
COL18A1P39060 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC20.99■□□□□ 0.95
COL18A1P39060 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
COL18A1P39060 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
COL18A1P39060 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
COL18A1P39060 AC006001.1-201ENST00000325130 474 ntBASIC20.99■□□□□ 0.95
COL18A1P39060 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC20.99■□□□□ 0.95
COL18A1P39060 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
COL18A1P39060 MTX1P1-201ENST00000440904 838 ntBASIC20.99■□□□□ 0.95
COL18A1P39060 PFN2-215ENST00000497148 743 ntTSL 4 BASIC20.99■□□□□ 0.95
COL18A1P39060 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
COL18A1P39060 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC20.99■□□□□ 0.95
COL18A1P39060 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
COL18A1P39060 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC20.99■□□□□ 0.95
COL18A1P39060 ACTG1P17-201ENST00000558391 1119 ntBASIC20.99■□□□□ 0.95
COL18A1P39060 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
COL18A1P39060 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC20.99■□□□□ 0.95
COL18A1P39060 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
COL18A1P39060 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC20.99■□□□□ 0.95
COL18A1P39060 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC20.99■□□□□ 0.95
COL18A1P39060 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC20.99■□□□□ 0.95
COL18A1P39060 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC20.98■□□□□ 0.95
COL18A1P39060 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL18A1P39060 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL18A1P39060 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL18A1P39060 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC20.98■□□□□ 0.95
COL18A1P39060 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL18A1P39060 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
COL18A1P39060 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL18A1P39060 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL18A1P39060 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL18A1P39060 CNN2P10-201ENST00000443067 918 ntBASIC20.98■□□□□ 0.95
COL18A1P39060 AC104306.2-201ENST00000451877 341 ntBASIC20.98■□□□□ 0.95
COL18A1P39060 LINC02205-201ENST00000559752 239 ntTSL 5 BASIC20.98■□□□□ 0.95
COL18A1P39060 KSR1-207ENST00000578981 748 ntTSL 4 BASIC20.98■□□□□ 0.95
COL18A1P39060 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL18A1P39060 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
COL18A1P39060 ABHD18-206ENST00000611882 1493 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
COL18A1P39060 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC20.98■□□□□ 0.95
COL18A1P39060 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL18A1P39060 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC20.98■□□□□ 0.95
COL18A1P39060 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL18A1P39060 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
COL18A1P39060 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL18A1P39060 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL18A1P39060 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC20.98■□□□□ 0.95
COL18A1P39060 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL18A1P39060 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL18A1P39060 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
COL18A1P39060 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
COL18A1P39060 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
COL18A1P39060 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
COL18A1P39060 AL591846.1-201ENST00000451736 433 ntBASIC20.97■□□□□ 0.95
COL18A1P39060 AC091804.1-201ENST00000486888 567 ntBASIC20.97■□□□□ 0.95
COL18A1P39060 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC20.97■□□□□ 0.95
COL18A1P39060 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
COL18A1P39060 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC20.97■□□□□ 0.95
COL18A1P39060 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
COL18A1P39060 AC138951.2-201ENST00000623455 1161 ntBASIC20.97■□□□□ 0.95
COL18A1P39060 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC20.97■□□□□ 0.95
COL18A1P39060 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
COL18A1P39060 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
COL18A1P39060 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC20.97■□□□□ 0.95
COL18A1P39060 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
COL18A1P39060 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
COL18A1P39060 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
COL18A1P39060 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
COL18A1P39060 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
COL18A1P39060 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC20.97■□□□□ 0.95
COL18A1P39060 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC20.97■□□□□ 0.95
COL18A1P39060 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC20.97■□□□□ 0.95
COL18A1P39060 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
COL18A1P39060 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC20.97■□□□□ 0.95
COL18A1P39060 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
COL18A1P39060 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
COL18A1P39060 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC20.97■□□□□ 0.95
COL18A1P39060 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC20.97■□□□□ 0.95
COL18A1P39060 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
COL18A1P39060 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
COL18A1P39060 HLA-DPB2-205ENST00000435074 1188 ntBASIC20.97■□□□□ 0.95
COL18A1P39060 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
COL18A1P39060 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC20.97■□□□□ 0.95
COL18A1P39060 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC20.97■□□□□ 0.95
COL18A1P39060 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC20.97■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms