Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC12.61□□□□□ -0.39
HOXD3P31249 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC12.61□□□□□ -0.39
HOXD3P31249 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
HOXD3P31249 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
HOXD3P31249 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
HOXD3P31249 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
HOXD3P31249 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
HOXD3P31249 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
HOXD3P31249 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
HOXD3P31249 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC12.61□□□□□ -0.39
HOXD3P31249 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC12.61□□□□□ -0.39
HOXD3P31249 OS9-205ENST00000413095 1660 ntTSL 2 BASIC12.61□□□□□ -0.39
HOXD3P31249 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
HOXD3P31249 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HOXD3P31249 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
HOXD3P31249 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
HOXD3P31249 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC12.6□□□□□ -0.39
HOXD3P31249 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
HOXD3P31249 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HOXD3P31249 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
HOXD3P31249 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
HOXD3P31249 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HOXD3P31249 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC12.6□□□□□ -0.39
HOXD3P31249 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HOXD3P31249 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
HOXD3P31249 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HOXD3P31249 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC12.6□□□□□ -0.39
HOXD3P31249 FAM207CP-201ENST00000443486 507 ntBASIC12.6□□□□□ -0.39
HOXD3P31249 AC093724.1-201ENST00000448659 1027 ntBASIC12.6□□□□□ -0.39
HOXD3P31249 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC12.6□□□□□ -0.39
HOXD3P31249 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC12.6□□□□□ -0.39
HOXD3P31249 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
HOXD3P31249 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC12.6□□□□□ -0.39
HOXD3P31249 SSH2-211ENST00000590153 570 ntTSL 4 BASIC12.6□□□□□ -0.39
HOXD3P31249 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC12.6□□□□□ -0.39
HOXD3P31249 CECR7-204ENST00000609932 568 ntTSL 2 BASIC12.6□□□□□ -0.39
HOXD3P31249 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC12.6□□□□□ -0.39
HOXD3P31249 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
HOXD3P31249 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC12.6□□□□□ -0.39
HOXD3P31249 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HOXD3P31249 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HOXD3P31249 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
HOXD3P31249 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HOXD3P31249 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
HOXD3P31249 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HOXD3P31249 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HOXD3P31249 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
HOXD3P31249 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HOXD3P31249 AC079328.2-201ENST00000561241 3354 ntBASIC12.6□□□□□ -0.39
HOXD3P31249 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HOXD3P31249 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC12.59□□□□□ -0.39
HOXD3P31249 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
HOXD3P31249 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC12.59□□□□□ -0.39
HOXD3P31249 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
HOXD3P31249 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC12.59□□□□□ -0.39
HOXD3P31249 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
HOXD3P31249 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
HOXD3P31249 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
HOXD3P31249 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC12.59□□□□□ -0.39
HOXD3P31249 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC12.59□□□□□ -0.39
HOXD3P31249 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
HOXD3P31249 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC12.59□□□□□ -0.39
HOXD3P31249 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
HOXD3P31249 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
HOXD3P31249 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
HOXD3P31249 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
HOXD3P31249 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
HOXD3P31249 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC12.59□□□□□ -0.39
HOXD3P31249 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC12.59□□□□□ -0.39
HOXD3P31249 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
HOXD3P31249 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
HOXD3P31249 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
HOXD3P31249 GK-202ENST00000378941 458 ntTSL 3 BASIC12.59□□□□□ -0.39
HOXD3P31249 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC12.59□□□□□ -0.39
HOXD3P31249 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC12.59□□□□□ -0.39
HOXD3P31249 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC12.59□□□□□ -0.39
HOXD3P31249 AC092580.3-201ENST00000430932 139 ntBASIC12.59□□□□□ -0.39
HOXD3P31249 AC098859.1-201ENST00000502915 1238 ntBASIC12.59□□□□□ -0.39
HOXD3P31249 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
HOXD3P31249 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC12.59□□□□□ -0.39
HOXD3P31249 AC027369.6-201ENST00000525520 931 ntBASIC12.59□□□□□ -0.39
HOXD3P31249 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC12.59□□□□□ -0.39
HOXD3P31249 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC12.59□□□□□ -0.39
HOXD3P31249 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC12.59□□□□□ -0.39
HOXD3P31249 COX11-202ENST00000571584 1108 ntTSL 2 BASIC12.59□□□□□ -0.39
HOXD3P31249 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC12.59□□□□□ -0.39
HOXD3P31249 AC003101.2-201ENST00000612557 442 ntBASIC12.59□□□□□ -0.39
HOXD3P31249 SPTSSB-204ENST00000617024 1292 ntBASIC12.59□□□□□ -0.39
HOXD3P31249 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC12.59□□□□□ -0.39
HOXD3P31249 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC12.59□□□□□ -0.39
HOXD3P31249 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC12.59□□□□□ -0.39
HOXD3P31249 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
HOXD3P31249 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC12.59□□□□□ -0.39
HOXD3P31249 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
HOXD3P31249 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
HOXD3P31249 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
HOXD3P31249 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
HOXD3P31249 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
HOXD3P31249 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
HOXD3P31249 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC12.59□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms