Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL8A1P27658 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL8A1P27658 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
COL8A1P27658 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
COL8A1P27658 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
COL8A1P27658 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
COL8A1P27658 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL8A1P27658 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL8A1P27658 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
COL8A1P27658 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
COL8A1P27658 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL8A1P27658 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC14.18□□□□□ -0.14
COL8A1P27658 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL8A1P27658 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL8A1P27658 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL8A1P27658 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL8A1P27658 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC14.17□□□□□ -0.14
COL8A1P27658 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC14.17□□□□□ -0.14
COL8A1P27658 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC14.17□□□□□ -0.14
COL8A1P27658 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL8A1P27658 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC14.17□□□□□ -0.14
COL8A1P27658 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC14.17□□□□□ -0.14
COL8A1P27658 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL8A1P27658 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC14.17□□□□□ -0.14
COL8A1P27658 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC14.17□□□□□ -0.14
COL8A1P27658 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL8A1P27658 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
COL8A1P27658 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL8A1P27658 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL8A1P27658 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC14.17□□□□□ -0.14
COL8A1P27658 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL8A1P27658 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
COL8A1P27658 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC14.17□□□□□ -0.14
COL8A1P27658 PFDN6-204ENST00000395131 884 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL8A1P27658 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
COL8A1P27658 GGCT-203ENST00000409144 836 ntTSL 2 BASIC14.17□□□□□ -0.14
COL8A1P27658 FXNP2-201ENST00000411625 547 ntBASIC14.17□□□□□ -0.14
COL8A1P27658 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC14.17□□□□□ -0.14
COL8A1P27658 RPL7P3-201ENST00000441388 714 ntBASIC14.17□□□□□ -0.14
COL8A1P27658 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL8A1P27658 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC14.17□□□□□ -0.14
COL8A1P27658 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC14.17□□□□□ -0.14
COL8A1P27658 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC14.17□□□□□ -0.14
COL8A1P27658 GGCT-201ENST00000005374 1032 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
COL8A1P27658 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC14.17□□□□□ -0.14
COL8A1P27658 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC14.17□□□□□ -0.14
COL8A1P27658 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC14.17□□□□□ -0.14
COL8A1P27658 DERL2-202ENST00000570848 657 ntTSL 5 BASIC14.17□□□□□ -0.14
COL8A1P27658 ABBA01031660.1-201ENST00000635219 756 ntBASIC14.17□□□□□ -0.14
COL8A1P27658 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
COL8A1P27658 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
COL8A1P27658 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
COL8A1P27658 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL8A1P27658 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
COL8A1P27658 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL8A1P27658 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL8A1P27658 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL8A1P27658 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
COL8A1P27658 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
COL8A1P27658 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC14.17□□□□□ -0.14
COL8A1P27658 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
COL8A1P27658 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL8A1P27658 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
COL8A1P27658 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC14.17□□□□□ -0.14
COL8A1P27658 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL8A1P27658 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL8A1P27658 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
COL8A1P27658 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC14.16□□□□□ -0.14
COL8A1P27658 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC14.16□□□□□ -0.14
COL8A1P27658 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL8A1P27658 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
COL8A1P27658 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC14.16□□□□□ -0.14
COL8A1P27658 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC14.16□□□□□ -0.14
COL8A1P27658 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC14.16□□□□□ -0.14
COL8A1P27658 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC14.16□□□□□ -0.14
COL8A1P27658 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL8A1P27658 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL8A1P27658 PRORSD1P-202ENST00000563365 2154 ntBASIC14.16□□□□□ -0.14
COL8A1P27658 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC14.16□□□□□ -0.14
COL8A1P27658 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL8A1P27658 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL8A1P27658 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL8A1P27658 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL8A1P27658 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC14.16□□□□□ -0.14
COL8A1P27658 RPL28-203ENST00000428193 573 ntTSL 2 BASIC14.16□□□□□ -0.14
COL8A1P27658 LYRM4-206ENST00000468929 1168 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
COL8A1P27658 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC14.16□□□□□ -0.14
COL8A1P27658 HNRNPA1P13-201ENST00000510646 963 ntBASIC14.16□□□□□ -0.14
COL8A1P27658 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC14.16□□□□□ -0.14
COL8A1P27658 NEU3-202ENST00000526068 431 ntTSL 2 BASIC14.16□□□□□ -0.14
COL8A1P27658 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL8A1P27658 TIMM17BP1-201ENST00000545713 516 ntBASIC14.16□□□□□ -0.14
COL8A1P27658 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC14.16□□□□□ -0.14
COL8A1P27658 RPL28-207ENST00000558815 616 ntTSL 2 BASIC14.16□□□□□ -0.14
COL8A1P27658 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC14.16□□□□□ -0.14
COL8A1P27658 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC14.16□□□□□ -0.14
COL8A1P27658 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC14.16□□□□□ -0.14
COL8A1P27658 AC107982.2-201ENST00000577360 463 ntTSL 5 BASIC14.16□□□□□ -0.14
COL8A1P27658 MIR5189-201ENST00000577370 114 ntBASIC14.16□□□□□ -0.14
COL8A1P27658 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms