Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC16.6■□□□□ 0.25
COL9A1P20849 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL9A1P20849 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL9A1P20849 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL9A1P20849 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL9A1P20849 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL9A1P20849 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL9A1P20849 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
COL9A1P20849 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL9A1P20849 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
COL9A1P20849 PIGF-202ENST00000306465 1061 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
COL9A1P20849 AIMP2-202ENST00000395236 860 ntTSL 2 BASIC16.59■□□□□ 0.25
COL9A1P20849 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
COL9A1P20849 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC16.59■□□□□ 0.25
COL9A1P20849 AC007969.1-201ENST00000433675 447 ntBASIC16.59■□□□□ 0.25
COL9A1P20849 AL162726.2-201ENST00000438986 1017 ntBASIC16.59■□□□□ 0.25
COL9A1P20849 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
COL9A1P20849 SERBP1P3-201ENST00000459980 809 ntBASIC16.59■□□□□ 0.25
COL9A1P20849 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC16.59■□□□□ 0.25
COL9A1P20849 CYB561A3-219ENST00000544118 1136 ntTSL 5 BASIC16.59■□□□□ 0.25
COL9A1P20849 MAX-210ENST00000555419 765 ntTSL 5 BASIC16.59■□□□□ 0.25
COL9A1P20849 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC16.59■□□□□ 0.25
COL9A1P20849 PRKXP1-201ENST00000561423 1122 ntBASIC16.59■□□□□ 0.25
COL9A1P20849 MIR3907-201ENST00000579424 151 ntBASIC16.59■□□□□ 0.25
COL9A1P20849 FHL2-212ENST00000607522 759 ntTSL 2 BASIC16.59■□□□□ 0.25
COL9A1P20849 PLS3-210ENST00000626746 216 ntTSL 4 BASIC16.59■□□□□ 0.25
COL9A1P20849 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC16.59■□□□□ 0.25
COL9A1P20849 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC16.59■□□□□ 0.25
COL9A1P20849 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC16.59■□□□□ 0.25
COL9A1P20849 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC16.59■□□□□ 0.25
COL9A1P20849 COLEC11-201ENST00000236693 1381 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
COL9A1P20849 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
COL9A1P20849 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC16.59■□□□□ 0.25
COL9A1P20849 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL9A1P20849 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
COL9A1P20849 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
COL9A1P20849 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
COL9A1P20849 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC16.59■□□□□ 0.25
COL9A1P20849 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC16.59■□□□□ 0.25
COL9A1P20849 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.25
COL9A1P20849 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
COL9A1P20849 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
COL9A1P20849 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
COL9A1P20849 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
COL9A1P20849 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
COL9A1P20849 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
COL9A1P20849 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
COL9A1P20849 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
COL9A1P20849 TPO-206ENST00000382269 1155 ntTSL 5 BASIC16.58■□□□□ 0.24
COL9A1P20849 AL035696.2-201ENST00000407941 709 ntBASIC16.58■□□□□ 0.24
COL9A1P20849 AL627389.1-201ENST00000413508 1182 ntBASIC16.58■□□□□ 0.24
COL9A1P20849 KRTAP19-9P-201ENST00000421795 191 ntBASIC16.58■□□□□ 0.24
COL9A1P20849 AC003659.1-201ENST00000424251 465 ntTSL 5 BASIC16.58■□□□□ 0.24
COL9A1P20849 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.24
COL9A1P20849 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC16.58■□□□□ 0.24
COL9A1P20849 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC16.58■□□□□ 0.24
COL9A1P20849 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC16.58■□□□□ 0.24
COL9A1P20849 AC018761.2-201ENST00000585496 296 ntTSL 3 BASIC16.58■□□□□ 0.24
COL9A1P20849 AL133445.2-201ENST00000611191 527 ntBASIC16.58■□□□□ 0.24
COL9A1P20849 RN7SL736P-201ENST00000613111 269 ntBASIC16.58■□□□□ 0.24
COL9A1P20849 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC16.58■□□□□ 0.24
COL9A1P20849 CU634019.7-201ENST00000624153 1185 ntBASIC16.58■□□□□ 0.24
COL9A1P20849 FP236241.2-201ENST00000624906 1185 ntBASIC16.58■□□□□ 0.24
COL9A1P20849 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
COL9A1P20849 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
COL9A1P20849 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
COL9A1P20849 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
COL9A1P20849 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC16.58■□□□□ 0.24
COL9A1P20849 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
COL9A1P20849 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC16.58■□□□□ 0.24
COL9A1P20849 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC16.58■□□□□ 0.24
COL9A1P20849 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
COL9A1P20849 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC16.58■□□□□ 0.24
COL9A1P20849 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC16.58■□□□□ 0.24
COL9A1P20849 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC16.58■□□□□ 0.24
COL9A1P20849 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
COL9A1P20849 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC16.58■□□□□ 0.24
COL9A1P20849 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
COL9A1P20849 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
COL9A1P20849 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
COL9A1P20849 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
COL9A1P20849 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
COL9A1P20849 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
COL9A1P20849 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC16.57■□□□□ 0.24
COL9A1P20849 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
COL9A1P20849 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
COL9A1P20849 AL391256.1-201ENST00000443260 1855 ntBASIC16.57■□□□□ 0.24
COL9A1P20849 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
COL9A1P20849 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC16.57■□□□□ 0.24
COL9A1P20849 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
COL9A1P20849 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC16.57■□□□□ 0.24
COL9A1P20849 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
COL9A1P20849 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC16.57■□□□□ 0.24
COL9A1P20849 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC16.57■□□□□ 0.24
COL9A1P20849 LHFPL3-201ENST00000401970 1378 ntAPPRIS ALT1 TSL 1 (best) BASIC16.57■□□□□ 0.24
COL9A1P20849 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
COL9A1P20849 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
COL9A1P20849 GAD1-203ENST00000375272 1252 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
COL9A1P20849 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC16.57■□□□□ 0.24
COL9A1P20849 EEF1DP6-201ENST00000449232 372 ntBASIC16.57■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms