Protein–RNA interactions for Protein: O14562

UBFD1, Ubiquitin domain-containing protein UBFD1, humanhuman

Known RBP Predictions only

Length 309 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBFD1O14562 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC15.8■□□□□ 0.12
UBFD1O14562 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC15.8■□□□□ 0.12
UBFD1O14562 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
UBFD1O14562 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
UBFD1O14562 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
UBFD1O14562 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC15.8■□□□□ 0.12
UBFD1O14562 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
UBFD1O14562 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC15.8■□□□□ 0.12
UBFD1O14562 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC15.8■□□□□ 0.12
UBFD1O14562 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
UBFD1O14562 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC15.8■□□□□ 0.12
UBFD1O14562 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC15.8■□□□□ 0.12
UBFD1O14562 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC15.8■□□□□ 0.12
UBFD1O14562 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC15.8■□□□□ 0.12
UBFD1O14562 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC15.8■□□□□ 0.12
UBFD1O14562 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
UBFD1O14562 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC15.8■□□□□ 0.12
UBFD1O14562 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
UBFD1O14562 HS6ST1P1-201ENST00000481504 1234 ntBASIC15.8■□□□□ 0.12
UBFD1O14562 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
UBFD1O14562 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC15.8■□□□□ 0.12
UBFD1O14562 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC15.8■□□□□ 0.12
UBFD1O14562 LITAF-211ENST00000572255 516 ntTSL 4 BASIC15.8■□□□□ 0.12
UBFD1O14562 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC15.8■□□□□ 0.12
UBFD1O14562 AL078644.1-201ENST00000609881 752 ntBASIC15.8■□□□□ 0.12
UBFD1O14562 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
UBFD1O14562 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
UBFD1O14562 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC15.8■□□□□ 0.12
UBFD1O14562 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
UBFD1O14562 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC15.8■□□□□ 0.12
UBFD1O14562 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
UBFD1O14562 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
UBFD1O14562 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
UBFD1O14562 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
UBFD1O14562 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
UBFD1O14562 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC15.8■□□□□ 0.12
UBFD1O14562 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
UBFD1O14562 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
UBFD1O14562 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
UBFD1O14562 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
UBFD1O14562 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
UBFD1O14562 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
UBFD1O14562 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC15.8■□□□□ 0.12
UBFD1O14562 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
UBFD1O14562 AC073439.1-201ENST00000624121 1774 ntBASIC15.8■□□□□ 0.12
UBFD1O14562 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
UBFD1O14562 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
UBFD1O14562 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
UBFD1O14562 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC15.79■□□□□ 0.12
UBFD1O14562 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC15.79■□□□□ 0.12
UBFD1O14562 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC15.79■□□□□ 0.12
UBFD1O14562 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
UBFD1O14562 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
UBFD1O14562 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
UBFD1O14562 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
UBFD1O14562 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
UBFD1O14562 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC15.79■□□□□ 0.12
UBFD1O14562 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
UBFD1O14562 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
UBFD1O14562 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
UBFD1O14562 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
UBFD1O14562 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
UBFD1O14562 AC004870.1-201ENST00000315132 882 ntBASIC15.79■□□□□ 0.12
UBFD1O14562 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
UBFD1O14562 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC15.79■□□□□ 0.12
UBFD1O14562 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC15.79■□□□□ 0.12
UBFD1O14562 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC15.79■□□□□ 0.12
UBFD1O14562 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
UBFD1O14562 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC15.79■□□□□ 0.12
UBFD1O14562 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC15.79■□□□□ 0.12
UBFD1O14562 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
UBFD1O14562 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
UBFD1O14562 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC15.79■□□□□ 0.12
UBFD1O14562 AC020658.6-201ENST00000623564 1870 ntBASIC15.79■□□□□ 0.12
UBFD1O14562 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC15.79■□□□□ 0.12
UBFD1O14562 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
UBFD1O14562 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
UBFD1O14562 GSN-206ENST00000394353 2311 ntTSL 2 BASIC15.79■□□□□ 0.12
UBFD1O14562 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
UBFD1O14562 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
UBFD1O14562 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC15.79■□□□□ 0.12
UBFD1O14562 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
UBFD1O14562 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
UBFD1O14562 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
UBFD1O14562 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC15.79■□□□□ 0.12
UBFD1O14562 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
UBFD1O14562 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC15.79■□□□□ 0.12
UBFD1O14562 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC15.79■□□□□ 0.12
UBFD1O14562 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
UBFD1O14562 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
UBFD1O14562 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
UBFD1O14562 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
UBFD1O14562 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
UBFD1O14562 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
UBFD1O14562 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC15.78■□□□□ 0.12
UBFD1O14562 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
UBFD1O14562 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC15.78■□□□□ 0.12
UBFD1O14562 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
UBFD1O14562 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
UBFD1O14562 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms