Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC17.02■□□□□ 0.32
PCDHA3Q9Y5H8 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
PCDHA3Q9Y5H8 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
PCDHA3Q9Y5H8 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
PCDHA3Q9Y5H8 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
PCDHA3Q9Y5H8 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
PCDHA3Q9Y5H8 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
PCDHA3Q9Y5H8 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.31
PCDHA3Q9Y5H8 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC17.02■□□□□ 0.31
PCDHA3Q9Y5H8 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC17.02■□□□□ 0.31
PCDHA3Q9Y5H8 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC17.02■□□□□ 0.31
PCDHA3Q9Y5H8 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
PCDHA3Q9Y5H8 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC17.02■□□□□ 0.31
PCDHA3Q9Y5H8 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC17.01■□□□□ 0.31
PCDHA3Q9Y5H8 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
PCDHA3Q9Y5H8 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PCDHA3Q9Y5H8 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PCDHA3Q9Y5H8 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC17.01■□□□□ 0.31
PCDHA3Q9Y5H8 PPT1-215ENST00000641471 2368 ntBASIC17.01■□□□□ 0.31
PCDHA3Q9Y5H8 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PCDHA3Q9Y5H8 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
PCDHA3Q9Y5H8 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
PCDHA3Q9Y5H8 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PCDHA3Q9Y5H8 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC17.01■□□□□ 0.31
PCDHA3Q9Y5H8 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
PCDHA3Q9Y5H8 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
PCDHA3Q9Y5H8 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
PCDHA3Q9Y5H8 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
PCDHA3Q9Y5H8 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
PCDHA3Q9Y5H8 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PCDHA3Q9Y5H8 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PCDHA3Q9Y5H8 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PCDHA3Q9Y5H8 AC140658.5-201ENST00000438532 169 ntBASIC17.01■□□□□ 0.31
PCDHA3Q9Y5H8 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
PCDHA3Q9Y5H8 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
PCDHA3Q9Y5H8 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC17.01■□□□□ 0.31
PCDHA3Q9Y5H8 CD63-204ENST00000546939 779 ntTSL 3 BASIC17.01■□□□□ 0.31
PCDHA3Q9Y5H8 QPRT-203ENST00000562473 579 ntTSL 3 BASIC17.01■□□□□ 0.31
PCDHA3Q9Y5H8 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC17.01■□□□□ 0.31
PCDHA3Q9Y5H8 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC17.01■□□□□ 0.31
PCDHA3Q9Y5H8 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC17.01■□□□□ 0.31
PCDHA3Q9Y5H8 AQP6-205ENST00000618286 829 ntTSL 5 BASIC17.01■□□□□ 0.31
PCDHA3Q9Y5H8 AC007064.4-201ENST00000637740 555 ntBASIC17.01■□□□□ 0.31
PCDHA3Q9Y5H8 AC073439.1-201ENST00000624121 1774 ntBASIC17.01■□□□□ 0.31
PCDHA3Q9Y5H8 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC17.01■□□□□ 0.31
PCDHA3Q9Y5H8 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
PCDHA3Q9Y5H8 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PCDHA3Q9Y5H8 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
PCDHA3Q9Y5H8 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC17.01■□□□□ 0.31
PCDHA3Q9Y5H8 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PCDHA3Q9Y5H8 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC17.01■□□□□ 0.31
PCDHA3Q9Y5H8 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PCDHA3Q9Y5H8 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PCDHA3Q9Y5H8 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PCDHA3Q9Y5H8 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PCDHA3Q9Y5H8 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC17.01■□□□□ 0.31
PCDHA3Q9Y5H8 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC17.01■□□□□ 0.31
PCDHA3Q9Y5H8 AL589702.1-201ENST00000641229 1509 ntBASIC17.01■□□□□ 0.31
PCDHA3Q9Y5H8 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PCDHA3Q9Y5H8 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC17.01■□□□□ 0.31
PCDHA3Q9Y5H8 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PCDHA3Q9Y5H8 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC17.01■□□□□ 0.31
PCDHA3Q9Y5H8 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
PCDHA3Q9Y5H8 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
PCDHA3Q9Y5H8 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
PCDHA3Q9Y5H8 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC17■□□□□ 0.31
PCDHA3Q9Y5H8 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC17■□□□□ 0.31
PCDHA3Q9Y5H8 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC17■□□□□ 0.31
PCDHA3Q9Y5H8 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
PCDHA3Q9Y5H8 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
PCDHA3Q9Y5H8 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
PCDHA3Q9Y5H8 AC011477.6-201ENST00000604980 1927 ntBASIC17■□□□□ 0.31
PCDHA3Q9Y5H8 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
PCDHA3Q9Y5H8 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC17■□□□□ 0.31
PCDHA3Q9Y5H8 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
PCDHA3Q9Y5H8 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
PCDHA3Q9Y5H8 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
PCDHA3Q9Y5H8 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC17■□□□□ 0.31
PCDHA3Q9Y5H8 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
PCDHA3Q9Y5H8 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
PCDHA3Q9Y5H8 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC17■□□□□ 0.31
PCDHA3Q9Y5H8 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
PCDHA3Q9Y5H8 MDH2-205ENST00000461263 648 ntTSL 2 BASIC17■□□□□ 0.31
PCDHA3Q9Y5H8 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC17■□□□□ 0.31
PCDHA3Q9Y5H8 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC17■□□□□ 0.31
PCDHA3Q9Y5H8 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
PCDHA3Q9Y5H8 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC17■□□□□ 0.31
PCDHA3Q9Y5H8 AP001005.1-201ENST00000571755 1248 ntBASIC17■□□□□ 0.31
PCDHA3Q9Y5H8 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
PCDHA3Q9Y5H8 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC17■□□□□ 0.31
PCDHA3Q9Y5H8 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC17■□□□□ 0.31
PCDHA3Q9Y5H8 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC17■□□□□ 0.31
PCDHA3Q9Y5H8 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC17■□□□□ 0.31
PCDHA3Q9Y5H8 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
PCDHA3Q9Y5H8 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC17■□□□□ 0.31
PCDHA3Q9Y5H8 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PCDHA3Q9Y5H8 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PCDHA3Q9Y5H8 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PCDHA3Q9Y5H8 MYB-201ENST00000316528 3571 ntTSL 5 BASIC16.99■□□□□ 0.31
PCDHA3Q9Y5H8 MYB-241ENST00000616088 3573 ntTSL 5 BASIC16.99■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 50.5 ms