Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
LIMCH1Q9UPQ0 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC19.19■□□□□ 0.66
LIMCH1Q9UPQ0 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LIMCH1Q9UPQ0 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LIMCH1Q9UPQ0 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LIMCH1Q9UPQ0 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
LIMCH1Q9UPQ0 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LIMCH1Q9UPQ0 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
LIMCH1Q9UPQ0 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
LIMCH1Q9UPQ0 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC19.19■□□□□ 0.66
LIMCH1Q9UPQ0 CRCP-205ENST00000431089 942 ntTSL 2 BASIC19.19■□□□□ 0.66
LIMCH1Q9UPQ0 KRT18P2-201ENST00000447938 1258 ntBASIC19.19■□□□□ 0.66
LIMCH1Q9UPQ0 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC19.19■□□□□ 0.66
LIMCH1Q9UPQ0 AC245100.5-201ENST00000452108 331 ntBASIC19.19■□□□□ 0.66
LIMCH1Q9UPQ0 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
LIMCH1Q9UPQ0 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC19.19■□□□□ 0.66
LIMCH1Q9UPQ0 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC19.19■□□□□ 0.66
LIMCH1Q9UPQ0 KRT19P2-202ENST00000557173 1012 ntBASIC19.19■□□□□ 0.66
LIMCH1Q9UPQ0 AC018845.2-201ENST00000568326 409 ntBASIC19.19■□□□□ 0.66
LIMCH1Q9UPQ0 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC19.19■□□□□ 0.66
LIMCH1Q9UPQ0 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC19.19■□□□□ 0.66
LIMCH1Q9UPQ0 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC19.19■□□□□ 0.66
LIMCH1Q9UPQ0 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC19.19■□□□□ 0.66
LIMCH1Q9UPQ0 AC064836.3-201ENST00000607928 673 ntBASIC19.19■□□□□ 0.66
LIMCH1Q9UPQ0 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
LIMCH1Q9UPQ0 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
LIMCH1Q9UPQ0 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LIMCH1Q9UPQ0 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
LIMCH1Q9UPQ0 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC19.19■□□□□ 0.66
LIMCH1Q9UPQ0 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LIMCH1Q9UPQ0 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
LIMCH1Q9UPQ0 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
LIMCH1Q9UPQ0 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
LIMCH1Q9UPQ0 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC19.18■□□□□ 0.66
LIMCH1Q9UPQ0 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LIMCH1Q9UPQ0 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LIMCH1Q9UPQ0 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
LIMCH1Q9UPQ0 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
LIMCH1Q9UPQ0 AC104109.2-201ENST00000602919 1418 ntBASIC19.18■□□□□ 0.66
LIMCH1Q9UPQ0 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LIMCH1Q9UPQ0 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
LIMCH1Q9UPQ0 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LIMCH1Q9UPQ0 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC19.18■□□□□ 0.66
LIMCH1Q9UPQ0 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
LIMCH1Q9UPQ0 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
LIMCH1Q9UPQ0 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LIMCH1Q9UPQ0 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.18■□□□□ 0.66
LIMCH1Q9UPQ0 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LIMCH1Q9UPQ0 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC19.18■□□□□ 0.66
LIMCH1Q9UPQ0 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
LIMCH1Q9UPQ0 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC19.18■□□□□ 0.66
LIMCH1Q9UPQ0 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
LIMCH1Q9UPQ0 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC19.18■□□□□ 0.66
LIMCH1Q9UPQ0 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC19.18■□□□□ 0.66
LIMCH1Q9UPQ0 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
LIMCH1Q9UPQ0 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
LIMCH1Q9UPQ0 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LIMCH1Q9UPQ0 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LIMCH1Q9UPQ0 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LIMCH1Q9UPQ0 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC19.18■□□□□ 0.66
LIMCH1Q9UPQ0 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC19.18■□□□□ 0.66
LIMCH1Q9UPQ0 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LIMCH1Q9UPQ0 MYB-242ENST00000618728 3545 ntTSL 5 BASIC19.17■□□□□ 0.66
LIMCH1Q9UPQ0 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
LIMCH1Q9UPQ0 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC19.17■□□□□ 0.66
LIMCH1Q9UPQ0 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LIMCH1Q9UPQ0 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LIMCH1Q9UPQ0 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
LIMCH1Q9UPQ0 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC19.17■□□□□ 0.66
LIMCH1Q9UPQ0 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LIMCH1Q9UPQ0 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LIMCH1Q9UPQ0 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC19.17■□□□□ 0.66
LIMCH1Q9UPQ0 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LIMCH1Q9UPQ0 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
LIMCH1Q9UPQ0 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC19.17■□□□□ 0.66
LIMCH1Q9UPQ0 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC19.17■□□□□ 0.66
LIMCH1Q9UPQ0 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC19.17■□□□□ 0.66
LIMCH1Q9UPQ0 TPM4P1-201ENST00000436100 807 ntBASIC19.17■□□□□ 0.66
LIMCH1Q9UPQ0 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC19.17■□□□□ 0.66
LIMCH1Q9UPQ0 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC19.17■□□□□ 0.66
LIMCH1Q9UPQ0 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC19.17■□□□□ 0.66
LIMCH1Q9UPQ0 AC002347.1-201ENST00000569543 541 ntBASIC19.17■□□□□ 0.66
LIMCH1Q9UPQ0 FHL2-212ENST00000607522 759 ntTSL 2 BASIC19.17■□□□□ 0.66
LIMCH1Q9UPQ0 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC19.17■□□□□ 0.66
LIMCH1Q9UPQ0 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC19.17■□□□□ 0.66
LIMCH1Q9UPQ0 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
LIMCH1Q9UPQ0 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
LIMCH1Q9UPQ0 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LIMCH1Q9UPQ0 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC19.17■□□□□ 0.66
LIMCH1Q9UPQ0 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC19.17■□□□□ 0.66
LIMCH1Q9UPQ0 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
LIMCH1Q9UPQ0 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
LIMCH1Q9UPQ0 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC19.17■□□□□ 0.66
LIMCH1Q9UPQ0 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LIMCH1Q9UPQ0 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LIMCH1Q9UPQ0 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC19.16■□□□□ 0.66
LIMCH1Q9UPQ0 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC19.16■□□□□ 0.66
LIMCH1Q9UPQ0 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LIMCH1Q9UPQ0 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LIMCH1Q9UPQ0 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 43.7 ms