Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC15.86■□□□□ 0.13
VPS4AQ9UN37 AC008667.4-201ENST00000607370 168 ntBASIC15.86■□□□□ 0.13
VPS4AQ9UN37 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
VPS4AQ9UN37 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
VPS4AQ9UN37 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
VPS4AQ9UN37 BCAR1-209ENST00000546196 1340 ntBASIC15.86■□□□□ 0.13
VPS4AQ9UN37 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
VPS4AQ9UN37 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
VPS4AQ9UN37 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
VPS4AQ9UN37 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
VPS4AQ9UN37 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
VPS4AQ9UN37 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
VPS4AQ9UN37 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC15.86■□□□□ 0.13
VPS4AQ9UN37 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC15.86■□□□□ 0.13
VPS4AQ9UN37 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
VPS4AQ9UN37 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC15.85■□□□□ 0.13
VPS4AQ9UN37 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VPS4AQ9UN37 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC15.85■□□□□ 0.13
VPS4AQ9UN37 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
VPS4AQ9UN37 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
VPS4AQ9UN37 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
VPS4AQ9UN37 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC15.85■□□□□ 0.13
VPS4AQ9UN37 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC15.85■□□□□ 0.13
VPS4AQ9UN37 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VPS4AQ9UN37 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC15.85■□□□□ 0.13
VPS4AQ9UN37 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
VPS4AQ9UN37 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC15.85■□□□□ 0.13
VPS4AQ9UN37 AC092850.2-201ENST00000623821 2697 ntBASIC15.85■□□□□ 0.13
VPS4AQ9UN37 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VPS4AQ9UN37 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VPS4AQ9UN37 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
VPS4AQ9UN37 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
VPS4AQ9UN37 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC15.85■□□□□ 0.13
VPS4AQ9UN37 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VPS4AQ9UN37 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VPS4AQ9UN37 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC15.85■□□□□ 0.13
VPS4AQ9UN37 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC15.85■□□□□ 0.13
VPS4AQ9UN37 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
VPS4AQ9UN37 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC15.85■□□□□ 0.13
VPS4AQ9UN37 FAM58CP-201ENST00000435741 640 ntBASIC15.85■□□□□ 0.13
VPS4AQ9UN37 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC15.85■□□□□ 0.13
VPS4AQ9UN37 TAF8-206ENST00000472818 719 ntTSL 2 BASIC15.85■□□□□ 0.13
VPS4AQ9UN37 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC15.85■□□□□ 0.13
VPS4AQ9UN37 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC15.85■□□□□ 0.13
VPS4AQ9UN37 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC15.85■□□□□ 0.13
VPS4AQ9UN37 PRR29-209ENST00000582540 967 ntTSL 2 BASIC15.85■□□□□ 0.13
VPS4AQ9UN37 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC15.85■□□□□ 0.13
VPS4AQ9UN37 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC15.85■□□□□ 0.13
VPS4AQ9UN37 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC15.85■□□□□ 0.13
VPS4AQ9UN37 AC004877.2-201ENST00000623941 599 ntBASIC15.85■□□□□ 0.13
VPS4AQ9UN37 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
VPS4AQ9UN37 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VPS4AQ9UN37 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC15.85■□□□□ 0.13
VPS4AQ9UN37 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC15.85■□□□□ 0.13
VPS4AQ9UN37 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
VPS4AQ9UN37 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
VPS4AQ9UN37 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VPS4AQ9UN37 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
VPS4AQ9UN37 SLC9A7P1-201ENST00000554295 3311 ntBASIC15.85■□□□□ 0.13
VPS4AQ9UN37 GGT3P-204ENST00000453783 1664 ntBASIC15.85■□□□□ 0.13
VPS4AQ9UN37 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC15.85■□□□□ 0.13
VPS4AQ9UN37 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC15.85■□□□□ 0.13
VPS4AQ9UN37 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC15.85■□□□□ 0.13
VPS4AQ9UN37 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
VPS4AQ9UN37 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VPS4AQ9UN37 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
VPS4AQ9UN37 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
VPS4AQ9UN37 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VPS4AQ9UN37 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC15.84■□□□□ 0.13
VPS4AQ9UN37 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VPS4AQ9UN37 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VPS4AQ9UN37 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
VPS4AQ9UN37 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC15.84■□□□□ 0.13
VPS4AQ9UN37 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VPS4AQ9UN37 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC15.84■□□□□ 0.13
VPS4AQ9UN37 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VPS4AQ9UN37 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VPS4AQ9UN37 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
VPS4AQ9UN37 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC15.84■□□□□ 0.13
VPS4AQ9UN37 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC15.84■□□□□ 0.13
VPS4AQ9UN37 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
VPS4AQ9UN37 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
VPS4AQ9UN37 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VPS4AQ9UN37 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VPS4AQ9UN37 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC15.84■□□□□ 0.13
VPS4AQ9UN37 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VPS4AQ9UN37 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VPS4AQ9UN37 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC15.84■□□□□ 0.13
VPS4AQ9UN37 MRPL20P1-201ENST00000400819 433 ntBASIC15.84■□□□□ 0.13
VPS4AQ9UN37 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
VPS4AQ9UN37 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC15.84■□□□□ 0.13
VPS4AQ9UN37 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC15.84■□□□□ 0.13
VPS4AQ9UN37 PNKD-204ENST00000436005 978 ntTSL 5 BASIC15.84■□□□□ 0.13
VPS4AQ9UN37 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC15.84■□□□□ 0.13
VPS4AQ9UN37 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC15.84■□□□□ 0.13
VPS4AQ9UN37 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
VPS4AQ9UN37 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC15.84■□□□□ 0.13
VPS4AQ9UN37 MPDU1-223ENST00000582151 728 ntBASIC15.84■□□□□ 0.13
VPS4AQ9UN37 AC010654.1-201ENST00000615722 808 ntBASIC15.84■□□□□ 0.13
VPS4AQ9UN37 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC15.84■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 44.9 ms