Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC20.9■□□□□ 0.94
SMC4Q9NTJ3 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SMC4Q9NTJ3 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SMC4Q9NTJ3 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC20.9■□□□□ 0.94
SMC4Q9NTJ3 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC20.9■□□□□ 0.94
SMC4Q9NTJ3 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SMC4Q9NTJ3 AC093520.2-201ENST00000561830 333 ntBASIC20.9■□□□□ 0.94
SMC4Q9NTJ3 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC20.9■□□□□ 0.94
SMC4Q9NTJ3 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC20.9■□□□□ 0.94
SMC4Q9NTJ3 AL603832.2-201ENST00000566195 2125 ntBASIC20.9■□□□□ 0.94
SMC4Q9NTJ3 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC20.9■□□□□ 0.94
SMC4Q9NTJ3 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SMC4Q9NTJ3 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC20.9■□□□□ 0.94
SMC4Q9NTJ3 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SMC4Q9NTJ3 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC20.9■□□□□ 0.94
SMC4Q9NTJ3 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC20.89■□□□□ 0.94
SMC4Q9NTJ3 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.94
SMC4Q9NTJ3 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC20.89■□□□□ 0.94
SMC4Q9NTJ3 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
SMC4Q9NTJ3 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
SMC4Q9NTJ3 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC20.89■□□□□ 0.94
SMC4Q9NTJ3 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
SMC4Q9NTJ3 AC010491.1-201ENST00000563101 2797 ntBASIC20.89■□□□□ 0.93
SMC4Q9NTJ3 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
SMC4Q9NTJ3 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
SMC4Q9NTJ3 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC20.89■□□□□ 0.93
SMC4Q9NTJ3 CBR1-202ENST00000399191 838 ntTSL 3 BASIC20.89■□□□□ 0.93
SMC4Q9NTJ3 PP14571-201ENST00000404327 934 ntTSL 2 BASIC20.89■□□□□ 0.93
SMC4Q9NTJ3 AC005237.2-201ENST00000434368 219 ntBASIC20.89■□□□□ 0.93
SMC4Q9NTJ3 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
SMC4Q9NTJ3 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC20.89■□□□□ 0.93
SMC4Q9NTJ3 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC20.89■□□□□ 0.93
SMC4Q9NTJ3 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC20.89■□□□□ 0.93
SMC4Q9NTJ3 AL365330.1-201ENST00000607459 531 ntBASIC20.89■□□□□ 0.93
SMC4Q9NTJ3 AC134684.3-201ENST00000641758 218 ntBASIC20.89■□□□□ 0.93
SMC4Q9NTJ3 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
SMC4Q9NTJ3 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
SMC4Q9NTJ3 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SMC4Q9NTJ3 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC20.89■□□□□ 0.93
SMC4Q9NTJ3 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
SMC4Q9NTJ3 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC20.89■□□□□ 0.93
SMC4Q9NTJ3 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC20.89■□□□□ 0.93
SMC4Q9NTJ3 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SMC4Q9NTJ3 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
SMC4Q9NTJ3 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
SMC4Q9NTJ3 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
SMC4Q9NTJ3 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SMC4Q9NTJ3 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
SMC4Q9NTJ3 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
SMC4Q9NTJ3 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
SMC4Q9NTJ3 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC20.88■□□□□ 0.93
SMC4Q9NTJ3 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC20.88■□□□□ 0.93
SMC4Q9NTJ3 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
SMC4Q9NTJ3 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC20.88■□□□□ 0.93
SMC4Q9NTJ3 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
SMC4Q9NTJ3 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SMC4Q9NTJ3 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SMC4Q9NTJ3 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC20.88■□□□□ 0.93
SMC4Q9NTJ3 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC20.88■□□□□ 0.93
SMC4Q9NTJ3 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SMC4Q9NTJ3 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC20.88■□□□□ 0.93
SMC4Q9NTJ3 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC20.88■□□□□ 0.93
SMC4Q9NTJ3 AP000344.2-201ENST00000512987 629 ntBASIC20.88■□□□□ 0.93
SMC4Q9NTJ3 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC20.88■□□□□ 0.93
SMC4Q9NTJ3 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SMC4Q9NTJ3 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SMC4Q9NTJ3 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SMC4Q9NTJ3 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC20.88■□□□□ 0.93
SMC4Q9NTJ3 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC20.88■□□□□ 0.93
SMC4Q9NTJ3 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
SMC4Q9NTJ3 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SMC4Q9NTJ3 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
SMC4Q9NTJ3 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
SMC4Q9NTJ3 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC20.88■□□□□ 0.93
SMC4Q9NTJ3 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SMC4Q9NTJ3 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
SMC4Q9NTJ3 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SMC4Q9NTJ3 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC20.87■□□□□ 0.93
SMC4Q9NTJ3 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC20.87■□□□□ 0.93
SMC4Q9NTJ3 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
SMC4Q9NTJ3 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SMC4Q9NTJ3 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SMC4Q9NTJ3 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SMC4Q9NTJ3 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SMC4Q9NTJ3 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC20.87■□□□□ 0.93
SMC4Q9NTJ3 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
SMC4Q9NTJ3 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SMC4Q9NTJ3 AL627223.1-201ENST00000416693 442 ntBASIC20.87■□□□□ 0.93
SMC4Q9NTJ3 FAM58DP-201ENST00000428076 619 ntBASIC20.87■□□□□ 0.93
SMC4Q9NTJ3 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC20.87■□□□□ 0.93
SMC4Q9NTJ3 MIR4321-201ENST00000592276 80 ntBASIC20.87■□□□□ 0.93
SMC4Q9NTJ3 AC084121.4-201ENST00000641598 221 ntBASIC20.87■□□□□ 0.93
SMC4Q9NTJ3 AF228730.8-201ENST00000642140 221 ntBASIC20.87■□□□□ 0.93
SMC4Q9NTJ3 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
SMC4Q9NTJ3 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
SMC4Q9NTJ3 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC20.87■□□□□ 0.93
SMC4Q9NTJ3 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SMC4Q9NTJ3 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC20.87■□□□□ 0.93
SMC4Q9NTJ3 SUPT20HL2-201ENST00000486479 2409 ntBASIC20.87■□□□□ 0.93
SMC4Q9NTJ3 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 56 ms