Protein–RNA interactions for Protein: Q9NSU2

TREX1, Three-prime repair exonuclease 1, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1Q9NSU2 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
TREX1Q9NSU2 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
TREX1Q9NSU2 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TREX1Q9NSU2 FABP5-202ENST00000396359 986 ntTSL 5 BASIC16.21■□□□□ 0.19
TREX1Q9NSU2 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
TREX1Q9NSU2 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC16.21■□□□□ 0.19
TREX1Q9NSU2 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC16.21■□□□□ 0.19
TREX1Q9NSU2 SPCS2P4-201ENST00000436160 681 ntBASIC16.21■□□□□ 0.19
TREX1Q9NSU2 MKNK2P1-201ENST00000437526 628 ntBASIC16.21■□□□□ 0.19
TREX1Q9NSU2 ACTG1P14-201ENST00000446382 1122 ntBASIC16.21■□□□□ 0.19
TREX1Q9NSU2 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC16.21■□□□□ 0.19
TREX1Q9NSU2 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC16.21■□□□□ 0.19
TREX1Q9NSU2 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC16.21■□□□□ 0.19
TREX1Q9NSU2 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC16.21■□□□□ 0.19
TREX1Q9NSU2 RNF34-208ENST00000555076 593 ntTSL 3 BASIC16.21■□□□□ 0.19
TREX1Q9NSU2 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC16.21■□□□□ 0.19
TREX1Q9NSU2 AC026120.1-201ENST00000611536 926 ntBASIC16.21■□□□□ 0.19
TREX1Q9NSU2 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC16.21■□□□□ 0.19
TREX1Q9NSU2 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TREX1Q9NSU2 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
TREX1Q9NSU2 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC16.21■□□□□ 0.19
TREX1Q9NSU2 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
TREX1Q9NSU2 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC16.21■□□□□ 0.19
TREX1Q9NSU2 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TREX1Q9NSU2 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TREX1Q9NSU2 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
TREX1Q9NSU2 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.18
TREX1Q9NSU2 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
TREX1Q9NSU2 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
TREX1Q9NSU2 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
TREX1Q9NSU2 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC16.21■□□□□ 0.18
TREX1Q9NSU2 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
TREX1Q9NSU2 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
TREX1Q9NSU2 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC16.2■□□□□ 0.18
TREX1Q9NSU2 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TREX1Q9NSU2 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
TREX1Q9NSU2 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TREX1Q9NSU2 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TREX1Q9NSU2 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC16.2■□□□□ 0.18
TREX1Q9NSU2 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TREX1Q9NSU2 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC16.2■□□□□ 0.18
TREX1Q9NSU2 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TREX1Q9NSU2 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TREX1Q9NSU2 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
TREX1Q9NSU2 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TREX1Q9NSU2 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
TREX1Q9NSU2 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC16.2■□□□□ 0.18
TREX1Q9NSU2 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC16.2■□□□□ 0.18
TREX1Q9NSU2 AC079140.1-201ENST00000508039 487 ntBASIC16.2■□□□□ 0.18
TREX1Q9NSU2 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC16.2■□□□□ 0.18
TREX1Q9NSU2 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC16.2■□□□□ 0.18
TREX1Q9NSU2 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC16.2■□□□□ 0.18
TREX1Q9NSU2 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC16.2■□□□□ 0.18
TREX1Q9NSU2 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC16.2■□□□□ 0.18
TREX1Q9NSU2 AP000842.3-202ENST00000569238 1080 ntBASIC16.2■□□□□ 0.18
TREX1Q9NSU2 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC16.2■□□□□ 0.18
TREX1Q9NSU2 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TREX1Q9NSU2 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
TREX1Q9NSU2 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC16.2■□□□□ 0.18
TREX1Q9NSU2 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC16.2■□□□□ 0.18
TREX1Q9NSU2 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TREX1Q9NSU2 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TREX1Q9NSU2 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC16.19■□□□□ 0.18
TREX1Q9NSU2 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC16.19■□□□□ 0.18
TREX1Q9NSU2 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
TREX1Q9NSU2 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
TREX1Q9NSU2 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TREX1Q9NSU2 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC16.19■□□□□ 0.18
TREX1Q9NSU2 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC16.19■□□□□ 0.18
TREX1Q9NSU2 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TREX1Q9NSU2 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TREX1Q9NSU2 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TREX1Q9NSU2 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TREX1Q9NSU2 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC16.19■□□□□ 0.18
TREX1Q9NSU2 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TREX1Q9NSU2 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC16.19■□□□□ 0.18
TREX1Q9NSU2 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC16.19■□□□□ 0.18
TREX1Q9NSU2 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC16.19■□□□□ 0.18
TREX1Q9NSU2 FAM220BP-201ENST00000377689 816 ntBASIC16.19■□□□□ 0.18
TREX1Q9NSU2 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC16.19■□□□□ 0.18
TREX1Q9NSU2 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC16.19■□□□□ 0.18
TREX1Q9NSU2 AP000347.1-202ENST00000435868 847 ntBASIC16.19■□□□□ 0.18
TREX1Q9NSU2 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
TREX1Q9NSU2 SPDYE11-202ENST00000450699 704 ntBASIC16.19■□□□□ 0.18
TREX1Q9NSU2 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
TREX1Q9NSU2 ALG1L5P-201ENST00000482043 771 ntBASIC16.19■□□□□ 0.18
TREX1Q9NSU2 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC16.19■□□□□ 0.18
TREX1Q9NSU2 SPDYE9P-201ENST00000570642 692 ntBASIC16.19■□□□□ 0.18
TREX1Q9NSU2 AC024267.1-201ENST00000582320 895 ntBASIC16.19■□□□□ 0.18
TREX1Q9NSU2 MTDHP5-201ENST00000598980 586 ntBASIC16.19■□□□□ 0.18
TREX1Q9NSU2 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC16.19■□□□□ 0.18
TREX1Q9NSU2 SPDYE10P-202ENST00000612005 668 ntBASIC16.19■□□□□ 0.18
TREX1Q9NSU2 SPDYE8P-202ENST00000612377 668 ntBASIC16.19■□□□□ 0.18
TREX1Q9NSU2 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC16.19■□□□□ 0.18
TREX1Q9NSU2 AC084121.4-201ENST00000641598 221 ntBASIC16.19■□□□□ 0.18
TREX1Q9NSU2 AF228730.8-201ENST00000642140 221 ntBASIC16.19■□□□□ 0.18
TREX1Q9NSU2 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TREX1Q9NSU2 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TREX1Q9NSU2 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC16.19■□□□□ 0.18
TREX1Q9NSU2 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 49.6 ms