Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
SIX2Q9NPC8 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SIX2Q9NPC8 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SIX2Q9NPC8 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC17.42■□□□□ 0.38
SIX2Q9NPC8 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
SIX2Q9NPC8 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SIX2Q9NPC8 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SIX2Q9NPC8 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
SIX2Q9NPC8 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC17.42■□□□□ 0.38
SIX2Q9NPC8 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SIX2Q9NPC8 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SIX2Q9NPC8 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SIX2Q9NPC8 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SIX2Q9NPC8 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC17.42■□□□□ 0.38
SIX2Q9NPC8 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
SIX2Q9NPC8 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SIX2Q9NPC8 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SIX2Q9NPC8 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC17.42■□□□□ 0.38
SIX2Q9NPC8 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC17.42■□□□□ 0.38
SIX2Q9NPC8 AC079140.1-201ENST00000508039 487 ntBASIC17.42■□□□□ 0.38
SIX2Q9NPC8 EHF-205ENST00000527935 557 ntTSL 2 BASIC17.42■□□□□ 0.38
SIX2Q9NPC8 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC17.42■□□□□ 0.38
SIX2Q9NPC8 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC17.42■□□□□ 0.38
SIX2Q9NPC8 RNF34-208ENST00000555076 593 ntTSL 3 BASIC17.42■□□□□ 0.38
SIX2Q9NPC8 CBFB-203ENST00000561924 584 ntTSL 5 BASIC17.42■□□□□ 0.38
SIX2Q9NPC8 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC17.42■□□□□ 0.38
SIX2Q9NPC8 AP000842.3-202ENST00000569238 1080 ntBASIC17.42■□□□□ 0.38
SIX2Q9NPC8 AC026120.1-201ENST00000611536 926 ntBASIC17.42■□□□□ 0.38
SIX2Q9NPC8 C20orf181-201ENST00000623918 480 ntBASIC17.42■□□□□ 0.38
SIX2Q9NPC8 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC17.42■□□□□ 0.38
SIX2Q9NPC8 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC17.42■□□□□ 0.38
SIX2Q9NPC8 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC17.42■□□□□ 0.38
SIX2Q9NPC8 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SIX2Q9NPC8 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC17.42■□□□□ 0.38
SIX2Q9NPC8 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC17.42■□□□□ 0.38
SIX2Q9NPC8 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SIX2Q9NPC8 AP001282.1-201ENST00000531301 1499 ntBASIC17.42■□□□□ 0.38
SIX2Q9NPC8 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SIX2Q9NPC8 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
SIX2Q9NPC8 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC17.42■□□□□ 0.38
SIX2Q9NPC8 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SIX2Q9NPC8 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC17.42■□□□□ 0.38
SIX2Q9NPC8 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SIX2Q9NPC8 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SIX2Q9NPC8 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SIX2Q9NPC8 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SIX2Q9NPC8 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
SIX2Q9NPC8 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SIX2Q9NPC8 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SIX2Q9NPC8 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SIX2Q9NPC8 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
SIX2Q9NPC8 FABP5-202ENST00000396359 986 ntTSL 5 BASIC17.41■□□□□ 0.38
SIX2Q9NPC8 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC17.41■□□□□ 0.38
SIX2Q9NPC8 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC17.41■□□□□ 0.38
SIX2Q9NPC8 FAM86C2P-203ENST00000528684 1004 ntBASIC17.41■□□□□ 0.38
SIX2Q9NPC8 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC17.41■□□□□ 0.38
SIX2Q9NPC8 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC17.41■□□□□ 0.38
SIX2Q9NPC8 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SIX2Q9NPC8 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
SIX2Q9NPC8 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SIX2Q9NPC8 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SIX2Q9NPC8 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SIX2Q9NPC8 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
SIX2Q9NPC8 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
SIX2Q9NPC8 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SIX2Q9NPC8 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
SIX2Q9NPC8 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC17.41■□□□□ 0.38
SIX2Q9NPC8 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC17.41■□□□□ 0.38
SIX2Q9NPC8 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SIX2Q9NPC8 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
SIX2Q9NPC8 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
SIX2Q9NPC8 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC17.4■□□□□ 0.38
SIX2Q9NPC8 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC17.4■□□□□ 0.38
SIX2Q9NPC8 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC17.4■□□□□ 0.38
SIX2Q9NPC8 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC17.4■□□□□ 0.38
SIX2Q9NPC8 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC17.4■□□□□ 0.38
SIX2Q9NPC8 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SIX2Q9NPC8 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC17.4■□□□□ 0.38
SIX2Q9NPC8 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
SIX2Q9NPC8 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SIX2Q9NPC8 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC17.4■□□□□ 0.38
SIX2Q9NPC8 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC17.4■□□□□ 0.38
SIX2Q9NPC8 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SIX2Q9NPC8 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
SIX2Q9NPC8 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SIX2Q9NPC8 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SIX2Q9NPC8 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SIX2Q9NPC8 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC17.4■□□□□ 0.38
SIX2Q9NPC8 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC17.4■□□□□ 0.38
SIX2Q9NPC8 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
SIX2Q9NPC8 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC17.4■□□□□ 0.38
SIX2Q9NPC8 RN7SL589P-201ENST00000481268 310 ntBASIC17.4■□□□□ 0.38
SIX2Q9NPC8 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC17.4■□□□□ 0.38
SIX2Q9NPC8 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC17.4■□□□□ 0.38
SIX2Q9NPC8 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC17.4■□□□□ 0.38
SIX2Q9NPC8 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SIX2Q9NPC8 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC17.4■□□□□ 0.38
SIX2Q9NPC8 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC17.4■□□□□ 0.38
SIX2Q9NPC8 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC17.4■□□□□ 0.38
SIX2Q9NPC8 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms