Protein–RNA interactions for Protein: Q96P16

RPRD1A, Regulation of nuclear pre-mRNA domain-containing protein 1A, humanhuman

Predicted RBP Predictions only

Length 312 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPRD1AQ96P16 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC16.78■□□□□ 0.28
RPRD1AQ96P16 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC16.78■□□□□ 0.28
RPRD1AQ96P16 AC061975.2-201ENST00000581722 295 ntBASIC16.78■□□□□ 0.28
RPRD1AQ96P16 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
RPRD1AQ96P16 ORC5-208ENST00000626700 344 ntTSL 3 BASIC16.78■□□□□ 0.28
RPRD1AQ96P16 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RPRD1AQ96P16 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RPRD1AQ96P16 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
RPRD1AQ96P16 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
RPRD1AQ96P16 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC16.78■□□□□ 0.28
RPRD1AQ96P16 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC16.78■□□□□ 0.28
RPRD1AQ96P16 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
RPRD1AQ96P16 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC16.78■□□□□ 0.28
RPRD1AQ96P16 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
RPRD1AQ96P16 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RPRD1AQ96P16 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC16.78■□□□□ 0.28
RPRD1AQ96P16 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RPRD1AQ96P16 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC16.78■□□□□ 0.28
RPRD1AQ96P16 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
RPRD1AQ96P16 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
RPRD1AQ96P16 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
RPRD1AQ96P16 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
RPRD1AQ96P16 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC16.77■□□□□ 0.28
RPRD1AQ96P16 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
RPRD1AQ96P16 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC16.77■□□□□ 0.28
RPRD1AQ96P16 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
RPRD1AQ96P16 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC16.77■□□□□ 0.28
RPRD1AQ96P16 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
RPRD1AQ96P16 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
RPRD1AQ96P16 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
RPRD1AQ96P16 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
RPRD1AQ96P16 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
RPRD1AQ96P16 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
RPRD1AQ96P16 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
RPRD1AQ96P16 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC16.77■□□□□ 0.28
RPRD1AQ96P16 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC16.77■□□□□ 0.28
RPRD1AQ96P16 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC16.77■□□□□ 0.28
RPRD1AQ96P16 CYMP-203ENST00000474680 1263 ntBASIC16.77■□□□□ 0.28
RPRD1AQ96P16 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC16.77■□□□□ 0.28
RPRD1AQ96P16 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
RPRD1AQ96P16 AC093512.1-201ENST00000617969 520 ntBASIC16.77■□□□□ 0.28
RPRD1AQ96P16 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC16.77■□□□□ 0.28
RPRD1AQ96P16 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
RPRD1AQ96P16 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
RPRD1AQ96P16 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
RPRD1AQ96P16 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC16.77■□□□□ 0.27
RPRD1AQ96P16 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.27
RPRD1AQ96P16 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
RPRD1AQ96P16 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC16.77■□□□□ 0.27
RPRD1AQ96P16 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
RPRD1AQ96P16 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
RPRD1AQ96P16 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC16.77■□□□□ 0.27
RPRD1AQ96P16 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC16.76■□□□□ 0.27
RPRD1AQ96P16 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC16.76■□□□□ 0.27
RPRD1AQ96P16 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
RPRD1AQ96P16 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC16.76■□□□□ 0.27
RPRD1AQ96P16 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
RPRD1AQ96P16 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
RPRD1AQ96P16 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC16.76■□□□□ 0.27
RPRD1AQ96P16 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
RPRD1AQ96P16 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
RPRD1AQ96P16 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
RPRD1AQ96P16 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC16.76■□□□□ 0.27
RPRD1AQ96P16 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC16.76■□□□□ 0.27
RPRD1AQ96P16 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC16.76■□□□□ 0.27
RPRD1AQ96P16 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
RPRD1AQ96P16 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
RPRD1AQ96P16 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
RPRD1AQ96P16 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
RPRD1AQ96P16 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC16.76■□□□□ 0.27
RPRD1AQ96P16 AC107890.1-201ENST00000422478 521 ntBASIC16.76■□□□□ 0.27
RPRD1AQ96P16 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
RPRD1AQ96P16 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC16.76■□□□□ 0.27
RPRD1AQ96P16 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC16.76■□□□□ 0.27
RPRD1AQ96P16 PPP6R2P1-201ENST00000450880 1275 ntBASIC16.76■□□□□ 0.27
RPRD1AQ96P16 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC16.76■□□□□ 0.27
RPRD1AQ96P16 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC16.76■□□□□ 0.27
RPRD1AQ96P16 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC16.76■□□□□ 0.27
RPRD1AQ96P16 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC16.76■□□□□ 0.27
RPRD1AQ96P16 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC16.76■□□□□ 0.27
RPRD1AQ96P16 AC051619.7-201ENST00000568314 623 ntBASIC16.76■□□□□ 0.27
RPRD1AQ96P16 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC16.76■□□□□ 0.27
RPRD1AQ96P16 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
RPRD1AQ96P16 AC007967.4-201ENST00000614700 386 ntBASIC16.76■□□□□ 0.27
RPRD1AQ96P16 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC16.76■□□□□ 0.27
RPRD1AQ96P16 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
RPRD1AQ96P16 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
RPRD1AQ96P16 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
RPRD1AQ96P16 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC16.76■□□□□ 0.27
RPRD1AQ96P16 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
RPRD1AQ96P16 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
RPRD1AQ96P16 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
RPRD1AQ96P16 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
RPRD1AQ96P16 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC16.76■□□□□ 0.27
RPRD1AQ96P16 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
RPRD1AQ96P16 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC16.76■□□□□ 0.27
RPRD1AQ96P16 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
RPRD1AQ96P16 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
RPRD1AQ96P16 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
RPRD1AQ96P16 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 46.9 ms